Difference between revisions of "Template:Bioinformatics"
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|state = {{{state<includeonly>|autocollapse</includeonly>}}} | |state = {{{state<includeonly>|autocollapse</includeonly>}}} | ||
|title = [[Bioinformatics]] | |title = [[Bioinformatics]] | ||
| − | |listclass = | + | |listclass = |
|group1 = Databases | |group1 = Databases | ||
|list1 = | |list1 = | ||
| − | * Sequence databases: [[GenBank]], [[ | + | * Sequence databases: [[GenBank]], [[European Nucleotide Archive]] and [[DNA Data Bank of Japan]] |
| − | * Secondary databases: [[UniProt]], database of protein sequences grouping together [[Swiss-Prot]], [[TrEMBL]] and [[Protein Information Resource]] | + | * Secondary databases: [[UniProt]], database of protein sequences grouping together [[UniProt#UniProtKB.2FSwiss-Prot|Swiss-Prot]], [[UniProt#UniProtKB.2FTrEMBL|TrEMBL]] and [[Protein Information Resource]] |
| − | * Other databases: [[Protein Data Bank]], [[Ensembl]] and [[InterPro]] | + | * Other databases: [[Protein Data Bank]], [[Ensembl genome database project|Ensembl]] and [[InterPro]] |
| − | * Specialised genomic databases: [[Saccharomyces Genome Database]], [[FlyBase]], [[WormBase]], [[The Arabidopsis Information Resource|Arabidopsis Information Resource]] and [[Zebrafish Information Network]] | + | * Specialised genomic databases: [[Barcode of Life Data System|BOLD]], [[Saccharomyces Genome Database]], [[FlyBase]], [[VectorBase]], [[WormBase]], [[Rat Genome Database]], [[PHI-base]], [[The Arabidopsis Information Resource|Arabidopsis Information Resource]] and [[Zebrafish Information Network]] |
| − | |group2 = | + | |group2 = Software |
| + | |list2class = hlist | ||
|list2 = | |list2 = | ||
| − | * | + | * [[BLAST]] |
| + | * [[Bowtie (sequence analysis)|Bowtie]] | ||
| + | * [[Clustal]] | ||
| + | * [[EMBOSS]] | ||
| + | * [[HMMER]] | ||
| + | * [[MUSCLE (alignment software)|MUSCLE]] | ||
| + | * [[SAMtools]] | ||
| + | * [[TopHat (bioinformatics)|TopHat]] | ||
| + | |||
| + | |group3 = Other | ||
| + | |list3class = hlist | ||
| + | |list3 = | ||
* Server: [[ExPASy]] | * Server: [[ExPASy]] | ||
| + | * Ontology: [[Gene ontology|Gene Ontology]] | ||
| + | * [[Rosalind (education platform)]] | ||
| − | | | + | |group4 = Institutions |
| − | | | + | |list4class = hlist |
| − | * [[European Bioinformatics Institute]] | + | |list4 = |
| − | * [[National Center for Biotechnology Information|US Center for Biotechnology Information]] | + | * [[Broad Institute]] |
| − | + | * [[Computational Biology Department]] (CBD) | |
| + | * [[COSBI|Microsoft Research - University of Trento Centre for Computational and Systems Biology]] (COSBI) | ||
| + | * [[Database Center for Life Science]] (DBCLS) | ||
| + | * [[DNA Data Bank of Japan]] (DDBJ) | ||
| + | * [[European Bioinformatics Institute]] (EMBL-EBI) | ||
| + | * [[European Molecular Biology Laboratory]] (EMBL) | ||
| + | * [[Flatiron Institute]] | ||
| + | * [[J. Craig Venter Institute]] (JCVI) | ||
| + | * [[Max Planck Institute of Molecular Cell Biology and Genetics]] (MPI-CBG) | ||
| + | * [[National Center for Biotechnology Information|US National Center for Biotechnology Information]] (NCBI) | ||
* [[National Institute of Genetics|Japanese Institute of Genetics]] | * [[National Institute of Genetics|Japanese Institute of Genetics]] | ||
| + | * [[Netherlands Bioinformatics Centre]] (NBIC) | ||
| + | * [[Philippine Genome Center]] (PGC) | ||
| + | * [[Scripps Research]] | ||
| + | * [[Swiss Institute of Bioinformatics]] (SIB) | ||
| + | * [[Wellcome Sanger Institute]] | ||
| + | * [[Whitehead Institute]] | ||
| + | |||
| + | |group5 = Organizations | ||
| + | |list5class = hlist | ||
| + | |list5 = | ||
| + | * [[African Society for Bioinformatics and Computational Biology]] (ASBCB) | ||
| + | * [[Australia Bioinformatics Resource]] (EMBL-AR) | ||
| + | * [[EMBnet|European Molecular Biology network]] (EMBnet) | ||
| + | * [[International Nucleotide Sequence Database Collaboration]] (INSDC) | ||
| + | * [[International Society for Biocuration]] (ISB) | ||
| + | * [[International Society for Computational Biology]] (ISCB) | ||
| + | ** [[International Society for Computational Biology Student Council|Student Council]] (ISCB-SC) | ||
| + | * [[Institute of Genomics and Integrative Biology]] (CSIR-IGIB) | ||
| + | * [[Japanese Society for Bioinformatics]] (JSBi) | ||
| + | |||
| + | |group6 = Meetings | ||
| + | |list6class = hlist | ||
| + | |list6 = | ||
| + | * [[Basel Computational Biology Conference]] ([BC<sup>2</sup>]) | ||
| + | * [[European Conference on Computational Biology]] (ECCB) | ||
| + | * [[Intelligent Systems for Molecular Biology]] (ISMB) | ||
| + | * [[International Conference on Bioinformatics]] (InCoB) | ||
| + | * [[ISCB Africa ASBCB Conference on Bioinformatics]] | ||
| + | * [[Pacific Symposium on Biocomputing]] (PSB) | ||
| + | * [[Research in Computational Molecular Biology]] (RECOMB) | ||
| − | | | + | |group7 = File formats |
| − | | | + | |list7class = hlist |
| + | |list7 = | ||
| + | * [[CRAM (file format)|CRAM format]] | ||
| + | * [[FASTA format]] | ||
| + | * [[FASTQ format]] | ||
| + | * [[NeXML format]] | ||
| + | * [[Nexus file|Nexus format]] | ||
| + | * [[Pileup format]] | ||
| + | * [[SAM (file format)|SAM format]] | ||
| + | * [[Stockholm format]] | ||
| + | |||
| + | |group8 = Related topics | ||
| + | |list8class = hlist | ||
| + | |list8 = | ||
| + | * [[Computational biology]] | ||
| + | * [[List of biological databases]] | ||
| + | * [[Molecular phylogenetics]] | ||
* [[Sequencing]] | * [[Sequencing]] | ||
* [[Sequence database]] | * [[Sequence database]] | ||
* [[Sequence alignment]] | * [[Sequence alignment]] | ||
| − | |||
| + | | belowclass = hlist | ||
| + | | below = | ||
| + | * {{Icon|Category}} '''[[:Category:Bioinformatics|Category]]''' | ||
| + | * {{icon|Commons}} '''[[:Commons:Category:Bioinformatics|Commons]]''' | ||
}}<noinclude> | }}<noinclude> | ||
| − | [[Category:Biology templates]] | + | {{documentation|content= |
| + | {{collapsible option}} | ||
| + | |||
| + | {{DEFAULTSORT:Bioinformatics}} | ||
| + | [[Category:Biology navbox templates]] | ||
| + | }} | ||
</noinclude> | </noinclude> | ||
Latest revision as of 00:48, 26 August 2020
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