Difference between revisions of "Template:Bioinformatics"

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|state      = {{{state<includeonly>|autocollapse</includeonly>}}}
 
|state      = {{{state<includeonly>|autocollapse</includeonly>}}}
 
|title      = [[Bioinformatics]]
 
|title      = [[Bioinformatics]]
|listclass  = hlist
+
|listclass  =  
  
 
|group1    = Databases
 
|group1    = Databases
 
|list1      =  
 
|list1      =  
* Sequence databases: [[GenBank]], [[EMBL Nucleotide Sequence Database]] and [[DNA Data Bank of Japan]]<br />
+
* Sequence databases: [[GenBank]], [[European Nucleotide Archive]] and [[DNA Data Bank of Japan]]
* Secondary databases: [[UniProt]], database of protein sequences grouping together [[Swiss-Prot]], [[TrEMBL]] and [[Protein Information Resource]]<br />
+
* Secondary databases: [[UniProt]], database of protein sequences grouping together [[UniProt#UniProtKB.2FSwiss-Prot|Swiss-Prot]], [[UniProt#UniProtKB.2FTrEMBL|TrEMBL]] and [[Protein Information Resource]]
* Other databases: [[Protein Data Bank]], [[Ensembl]] and [[InterPro]]<br />
+
* Other databases: [[Protein Data Bank]], [[Ensembl genome database project|Ensembl]] and [[InterPro]]
* Specialised genomic databases: [[Saccharomyces Genome Database]], [[FlyBase]], [[WormBase]], [[The Arabidopsis Information Resource|Arabidopsis Information Resource]] and [[Zebrafish Information Network]]
+
* Specialised genomic databases: [[Barcode of Life Data System|BOLD]], [[Saccharomyces Genome Database]], [[FlyBase]], [[VectorBase]], [[WormBase]], [[Rat Genome Database]], [[PHI-base]], [[The Arabidopsis Information Resource|Arabidopsis Information Resource]] and [[Zebrafish Information Network]]
 
   
 
   
|group2    = Other
+
|group2    = Software
 +
|list2class = hlist
 
|list2      =  
 
|list2      =  
* Algorithm: [[Basic Local Alignment Search Tool|BLAST]]
+
* [[BLAST]]
 +
* [[Bowtie (sequence analysis)|Bowtie]]
 +
* [[Clustal]]
 +
* [[EMBOSS]]
 +
* [[HMMER]]
 +
* [[MUSCLE (alignment software)|MUSCLE]]
 +
* [[SAMtools]]
 +
* [[TopHat (bioinformatics)|TopHat]]
 +
 
 +
|group3    = Other
 +
|list3class = hlist
 +
|list3      =
 
* Server: [[ExPASy]]
 
* Server: [[ExPASy]]
 +
* Ontology: [[Gene ontology|Gene Ontology]]
 +
* [[Rosalind (education platform)]]
  
|group3     = Institutions
+
|group4     = Institutions
|list3     =
+
|list4class = hlist
* [[European Bioinformatics Institute]]
+
|list4     =
* [[National Center for Biotechnology Information|US Center for Biotechnology Information]]
+
* [[Broad Institute]]
* [[Swiss Institute of Bioinformatics]]
+
* [[Computational Biology Department]] (CBD)
 +
* [[COSBI|Microsoft Research - University of Trento Centre for Computational and Systems Biology]] (COSBI)
 +
* [[Database Center for Life Science]] (DBCLS)
 +
* [[DNA Data Bank of Japan]] (DDBJ)
 +
* [[European Bioinformatics Institute]] (EMBL-EBI)
 +
* [[European Molecular Biology Laboratory]] (EMBL)
 +
* [[Flatiron Institute]]
 +
* [[J. Craig Venter Institute]] (JCVI)
 +
* [[Max Planck Institute of Molecular Cell Biology and Genetics]] (MPI-CBG)
 +
* [[National Center for Biotechnology Information|US National Center for Biotechnology Information]] (NCBI)
 
* [[National Institute of Genetics|Japanese Institute of Genetics]]
 
* [[National Institute of Genetics|Japanese Institute of Genetics]]
 +
* [[Netherlands Bioinformatics Centre]] (NBIC)
 +
* [[Philippine Genome Center]] (PGC)
 +
* [[Scripps Research]]
 +
* [[Swiss Institute of Bioinformatics]] (SIB)
 +
* [[Wellcome Sanger Institute]]
 +
* [[Whitehead Institute]]
 +
 +
|group5    = Organizations
 +
|list5class = hlist
 +
|list5      =
 +
* [[African Society for Bioinformatics and Computational Biology]] (ASBCB)
 +
* [[Australia Bioinformatics Resource]] (EMBL-AR)
 +
* [[EMBnet|European Molecular Biology network]] (EMBnet)
 +
* [[International Nucleotide Sequence Database Collaboration]] (INSDC)
 +
* [[International Society for Biocuration]] (ISB)
 +
* [[International Society for Computational Biology]] (ISCB)
 +
** [[International Society for Computational Biology Student Council|Student Council]] (ISCB-SC)
 +
* [[Institute of Genomics and Integrative Biology]] (CSIR-IGIB)
 +
* [[Japanese Society for Bioinformatics]] (JSBi)
 +
 +
|group6    = Meetings
 +
|list6class = hlist
 +
|list6      =
 +
* [[Basel Computational Biology Conference‎]] ([BC<sup>2</sup>])
 +
* [[European Conference on Computational Biology]] (ECCB)
 +
* [[Intelligent Systems for Molecular Biology]] (ISMB)
 +
* [[International Conference on Bioinformatics]] (InCoB)
 +
* [[ISCB Africa ASBCB Conference on Bioinformatics]]
 +
* [[Pacific Symposium on Biocomputing]] (PSB)
 +
* [[Research in Computational Molecular Biology]] (RECOMB)
  
|belowclass = hlist
+
|group7    = File formats
|below     =  
+
|list7class = hlist
 +
|list7     =  
 +
* [[CRAM (file format)|CRAM format]]
 +
* [[FASTA format]]
 +
* [[FASTQ format]]
 +
* [[NeXML format]]
 +
* [[Nexus file|Nexus format]]
 +
* [[Pileup format]]
 +
* [[SAM (file format)|SAM format]]
 +
* [[Stockholm format]]
 +
 
 +
|group8    = Related topics
 +
|list8class = hlist
 +
|list8      =
 +
* [[Computational biology]]
 +
* [[List of biological databases]]
 +
* [[Molecular phylogenetics]]
 
* [[Sequencing]]
 
* [[Sequencing]]
 
* [[Sequence database]]
 
* [[Sequence database]]
 
* [[Sequence alignment]]
 
* [[Sequence alignment]]
* [[Molecular phylogenetics]]
 
  
 +
| belowclass = hlist
 +
| below =
 +
* {{Icon|Category}} '''[[:Category:Bioinformatics|Category]]'''
 +
* {{icon|Commons}} '''[[:Commons:Category:Bioinformatics|Commons]]'''
 
}}<noinclude>
 
}}<noinclude>
 +
{{documentation|content=
 +
{{collapsible option}}
 +
 
{{DEFAULTSORT:Bioinformatics}}
 
{{DEFAULTSORT:Bioinformatics}}
[[Category:Biology templates]]
+
[[Category:Biology navbox templates]]
 +
}}
 
</noinclude>
 
</noinclude>

Latest revision as of 00:48, 26 August 2020

Template documentation

Initial visibility: currently defaults to autocollapse

To set this template's initial visibility, the |state= parameter may be used:

  • |state=collapsed: {{Bioinformatics|state=collapsed}} to show the template collapsed, i.e., hidden apart from its title bar
  • |state=expanded: {{Bioinformatics|state=expanded}} to show the template expanded, i.e., fully visible
  • |state=autocollapse: {{Bioinformatics|state=autocollapse}}
    • shows the template collapsed to the title bar if there is a {{navbar}}, a {{sidebar}}, or some other table on the page with the collapsible attribute
    • shows the template in its expanded state if there are no other collapsible items on the page

If the |state= parameter in the template on this page is not set, the template's initial visibility is taken from the |default= parameter in the Collapsible option template. For the template on this page, that currently evaluates to autocollapse.