Difference between revisions of "Template:Clade/demo"
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imported>Jts1882 (updates) |
imported>Jts1882 (update clade params) |
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| (One intermediate revision by the same user not shown) | |||
| Line 14: | Line 14: | ||
|label2=label2 | |label2=label2 | ||
|grouplabel2= leaf 2 is a nested clade structure | |grouplabel2= leaf 2 is a nested clade structure | ||
| − | + | |2={{Clade |style=background-color:#ffaaaa; | |
| − | |||
|label1=label A | |label1=label A | ||
| − | |1=leaf A | + | |1=leaf A |bar1=purple |
|label2=label B | |label2=label B | ||
| − | |2=leaf B | + | |2=leaf B |bar2=purple |
| − | |||
}} | }} | ||
|label3=label3 |sublabel3=sublabel3 | |label3=label3 |sublabel3=sublabel3 | ||
| Line 41: | Line 39: | ||
|2=red |color2=red | |2=red |color2=red | ||
|3=blue |color3=blue | |3=blue |color3=blue | ||
| − | |4= #00ff00 | + | |4= #00ff00 |color4=#00ff00 |
}} | }} | ||
|label3=stateN | |label3=stateN | ||
| Line 62: | Line 60: | ||
|3=K | |3=K | ||
}} | }} | ||
| − | |label2=color | + | |label2=color |
|2={{Clade |color=red | |2={{Clade |color=red | ||
|1=A | |1=A | ||
| − | |2=B | + | |2=B |
|3=C | |3=C | ||
}} | }} | ||
| Line 81: | Line 79: | ||
|6={{Clade | |6={{Clade | ||
|label2=subtree | |label2=subtree | ||
| − | |grouplabel2= expanded Newick string | + | |grouplabel2= expanded Newick string |
|2={{Clade |style=background-color:#ccffcc; | |2={{Clade |style=background-color:#ccffcc; | ||
|newick1=((lion,jaguar,leopard),((siberian,bengal)tiger,snow leopard))panthera | |newick1=((lion,jaguar,leopard),((siberian,bengal)tiger,snow leopard))panthera | ||
| Line 98: | Line 96: | ||
}} | }} | ||
|grouplabel2= label a paraphyletic group within a clade | |grouplabel2= label a paraphyletic group within a clade | ||
| − | | | + | |grouplabelstyle2=vertical-align:middle; |
|label2=clade | |label2=clade | ||
|style2=background-color:#ffddff; | |style2=background-color:#ffddff; | ||
| Line 122: | Line 120: | ||
|grouplabel1=<pre> | |grouplabel1=<pre> | ||
| − | + | |label1=Node structure |sublabel1=(brackets) | |
| − | + | |style1=background-color:#ffdddd; | |
| − | + | |1={{Clade | |
| + | |label1=label1 | ||
| + | |1=leaf 1 | ||
| + | |label2=label2 | ||
| + | |grouplabel2= leaf 3 is a nested clade structure | ||
| + | |2={{Clade |style=background-color:#ffaaaa; | ||
| + | |label1=label A | ||
| + | |1=leaf A | ||
| + | |label2=label B | ||
| + | |2=leaf B | ||
| + | |bar1=purple |bar2=purple | ||
| + | }} | ||
| + | |label3=label3 |sublabel3=sublabel3 | ||
| + | |3=leaf 3 | ||
| + | }}</pre> | ||
| + | |grouplabel3=<pre> | ||
| + | |label3=Leaf styling |sublabel3=(branches) | ||
| + | |style3=background-color:#eeeeee; | ||
| + | |3={{Clade | ||
| + | |label1=thicknessN | ||
|1={{Clade | |1={{Clade | ||
| − | | | + | |1=1 (default) |thickness1=1 |barbegin1=blue |
| − | + | |2=2 |thickness2=2 |bar2=blue |barlabel2= line thickness | |
| − | | | + | |3=3 |thickness3=3 |barend3=blue |
| − | + | }} | |
| − | + | |label2=colorN | |
| − | | | + | |2={{Clade |
| − | + | |1=black (default) |color1=black | |
| − | + | |2=red |color2=red | |
| − | + | |3=blue |color3=blue | |
| − | + | |4= #00ff00 |color4=#00ff00 | |
| − | + | }} | |
| − | + | |label3=stateN | |
| − | | | ||
| − | |3= | ||
| − | |||
| − | | | ||
| − | |||
| − | |||
| − | | | ||
|3={{Clade | |3={{Clade | ||
| − | + | |1=solid (default) |state1=solid |barbegin1=purple | |
| − | + | |2=dotted |state2=dotted |bar2=purple | |
| − | + | |3=dashed |state3=dashed |bar3=purple |barlabel3= line styles | |
| − | + | |4=none |state4=none |bar4=purple | |
| − | + | |5=double |state5=double |barend5=purple | |
| − | + | }} | |
| − | + | }}</pre> | |
| − | + | |grouplabel4=<pre> | |
| − | + | |label4=node styling |sublabel4=(brackets) | |
| − | + | |style4=background-color:#ffffee; | |
| − | + | |4={{Clade | |
| − | + | |label1=thickness | |
| − | + | |1={{Clade |thickness=3 | |
| − | + | |1=I | |
| − | + | |2=J | |
| − | + | |3=K | |
| − | + | }} | |
| − | + | |label2=color | |
| − | + | |2={{Clade |color=red | |
| − | + | |1=A | |
| − | + | |2=B | |
| − | + | |3=C | |
| − | |grouplabel4=<pre> | + | }} |
| − | + | |label3=state | |
| − | + | |3={{Clade |state=dashed | |
| − | + | |1=X | |
| − | + | |2=Y | |
| − | + | |3=Z | |
| − | + | }} }}</pre> | |
| − | + | |grouplabel6=<pre> | |
| − | + | |label6=newick | |
| − | + | |style6=background-color:#ddffdd; | |
| − | + | |6={{Clade | |
| − | + | |label1=string | |
| − | + | |1=((lion,jaguar,leopard),((siberian,bengal)tiger,snow leopard))panthera | |
| − | + | |label2=subtree | |
| − | + | |grouplabel2= expanded Newick string | |
| − | + | |grouplabelstyle2=vertical-align: middle; | |
| − | + | |2={{Clade |style=background-color:#ccffcc; | |
| − | + | |newick1=((lion,jaguar,leopard),((siberian,bengal)tiger,snow leopard))panthera | |
| − | + | |1=Leaf1 (redundant if newick1 set) | |
| − | + | }} | |
| − | + | }}</pre> | |
| − | + | |grouplabel7=<pre> | |
| − | + | |label7=paraphyly example |style7=background-color:#ffeeff; | |
| − | + | |7={{Clade | |
| − | |grouplabel6=<pre> | + | |1={{Clade |
| − | + | |1=[[Geraniales]] | |
| − | + | |2=[[Myrtales]] | |
| − | + | }} | |
| − | + | |grouplabel2= label a paraphyletic group within a clade | |
| − | + | |label2=clade | |
| − | + | |style2=background-color:#ffddff; | |
| − | + | |2={{Clade | |
| − | + | |1=[[Crossosomatales]] |barbegin1=purple | |
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |grouplabel7=<pre> | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
|2={{Clade | |2={{Clade | ||
| − | |1=[[ | + | |1=[[Picramniales]] |bar1=purple |
| − | |||
|2={{Clade | |2={{Clade | ||
| − | |1=[[ | + | |1=[[Sapindales]] |bar1=purple |
|2={{Clade | |2={{Clade | ||
| − | |1=[[ | + | |1=[[Huerteales]] |bar1=purple |
|2={{Clade | |2={{Clade | ||
| − | + | |1=[[Brassicales]] |barend1=purple | |
| − | + | |2=[[Malvales]] |style2=background-color:#ff99ff; | |
| − | + | }} }} }} }} }} }}</pre> | |
| − | |||
| − | |||
<!-- }}--> | <!-- }}--> | ||
}} | }} | ||
Latest revision as of 16:05, 28 November 2019
| Node structure |
|
|label1=Node structure |sublabel1=(brackets)
|style1=background-color:#ffdddd;
|1={{Clade
|label1=label1
|1=leaf 1
|label2=label2
|grouplabel2= leaf 3 is a nested clade structure
|2={{Clade |style=background-color:#ffaaaa;
|label1=label A
|1=leaf A
|label2=label B
|2=leaf B
|bar1=purple |bar2=purple
}}
|label3=label3 |sublabel3=sublabel3
|3=leaf 3
}}
| |||||||||||||||||||||||||||||||||||||||||||||||
| (brackets) | |||||||||||||||||||||||||||||||||||||||||||||||||
|
| |||||||||||||||||||||||||||||||||||||||||||||||||
| Leaf styling |
|
|label3=Leaf styling |sublabel3=(branches)
|style3=background-color:#eeeeee;
|3={{Clade
|label1=thicknessN
|1={{Clade
|1=1 (default) |thickness1=1 |barbegin1=blue
|2=2 |thickness2=2 |bar2=blue |barlabel2= line thickness
|3=3 |thickness3=3 |barend3=blue
}}
|label2=colorN
|2={{Clade
|1=black (default) |color1=black
|2=red |color2=red
|3=blue |color3=blue
|4= #00ff00 |color4=#00ff00
}}
|label3=stateN
|3={{Clade
|1=solid (default) |state1=solid |barbegin1=purple
|2=dotted |state2=dotted |bar2=purple
|3=dashed |state3=dashed |bar3=purple |barlabel3= line styles
|4=none |state4=none |bar4=purple
|5=double |state5=double |barend5=purple
}}
}}
| |||||||||||||||||||||||||||||||||||||||||||||||
| (branches) | |||||||||||||||||||||||||||||||||||||||||||||||||
| node styling |
|
|label4=node styling |sublabel4=(brackets)
|style4=background-color:#ffffee;
|4={{Clade
|label1=thickness
|1={{Clade |thickness=3
|1=I
|2=J
|3=K
}}
|label2=color
|2={{Clade |color=red
|1=A
|2=B
|3=C
}}
|label3=state
|3={{Clade |state=dashed
|1=X
|2=Y
|3=Z
}} }}
| |||||||||||||||||||||||||||||||||||||||||||||||
| (brackets) | |||||||||||||||||||||||||||||||||||||||||||||||||
|
| |||||||||||||||||||||||||||||||||||||||||||||||||
| newick |
|
|label6=newick
|style6=background-color:#ddffdd;
|6={{Clade
|label1=string
|1=((lion,jaguar,leopard),((siberian,bengal)tiger,snow leopard))panthera
|label2=subtree
|grouplabel2= expanded Newick string
|grouplabelstyle2=vertical-align: middle;
|2={{Clade |style=background-color:#ccffcc;
|newick1=((lion,jaguar,leopard),((siberian,bengal)tiger,snow leopard))panthera
|1=Leaf1 (redundant if newick1 set)
}}
}}
| |||||||||||||||||||||||||||||||||||||||||||||||
| paraphyly example |
|
|label7=paraphyly example |style7=background-color:#ffeeff;
|7={{Clade
|1={{Clade
|1=[[Geraniales]]
|2=[[Myrtales]]
}}
|grouplabel2= label a paraphyletic group within a clade
|label2=clade
|style2=background-color:#ffddff;
|2={{Clade
|1=[[Crossosomatales]] |barbegin1=purple
|2={{Clade
|1=[[Picramniales]] |bar1=purple
|2={{Clade
|1=[[Sapindales]] |bar1=purple
|2={{Clade
|1=[[Huerteales]] |bar1=purple
|2={{Clade
|1=[[Brassicales]] |barend1=purple
|2=[[Malvales]] |style2=background-color:#ff99ff;
}} }} }} }} }} }}
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A cladogram illustrating clade features. |
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