Difference between revisions of "Template:GNF Protein box"

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imported>Primefac
m (Reverted edits by Primefac (talk) to last version by FlightTime)
imported>Trialpears
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{{Tfm/dated|page=GNF Protein box|otherpage=Infobox gene|link=Wikipedia:Templates_for_discussion/Log/2019_March_30#Template:GNF_Protein_box|type=sidebar|help=off|bigbox={{#invoke:Noinclude|noinclude|text=yes}}}}
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#REDIRECT [[Template:Infobox gene]]
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{{Infobox3cols
 
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| headerstyle = background-color: #ddd
 
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| labelstyle  = background-color: #c3fdb8
 
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| datastyle  = background-color: #eee
 
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| name        = {{{path|}}}
 
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| above      = {{{Name|{{PAGENAME}} }}}
 
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| subheader  = {{{caption|}}}
 
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| image      = {{#invoke:InfoboxImage|InfoboxImage|image={{{image|}}}|size=250px|sizedefault=frameless|upright=1.14|alt={{{alt|}}}}}
 
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| caption    = {{{image_source|}}}
 
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|data1={{#if:{{{PDB|}}}
 
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| <table style="border: none; padding: 0; margin: 0; width: 100%; text-align: left">
 
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<tr style="background-color: #ddd; text-align: center">
 
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<th colspan=2>Available structures</th>
 
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</tr>
 
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<tr>
 
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<th rowspan = "2" style="background-color: #c3fdb8; width:43px">[[Protein Data Bank|PDB]]</th>
 
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<td colspan = "2" style="background-color: #eee"> {{#if:{{{Homologene|}}}|
 
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Ortholog search: [http://www.ebi.ac.uk/pdbe/searchResults.html?display=both&term={{Homologene2PDBe|{{{Homologene}}}}} PDBe], [http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=UpAccessionIdQuery&accessionIdList={{Homologene2uniprot|{{{Homologene}}}}} RCSB]|
 
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{{#if:{{{Hs_Uniprot|}}}|
 
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Human UniProt search: [http://www.ebi.ac.uk/pdbe/searchResults.html?display=both&term={{{Hs_Uniprot}}} PDBe], [http://www.rcsb.org/pdb/search/smartSubquery.do?smartSearchSubtype=UpAccessionIdQuery&accessionIdList=::{{{Hs_Uniprot}}} RCSB]
 
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}}
 
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}}
 
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</td>
 
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</tr>
 
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<tr>
 
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<td>
 
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<table class="collapsible collapsed" style="border: none; padding: 0; margin: 0; width: 100%; text-align: left">
 
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<tr style="background-color: #ddd; text-align: center">
 
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<th colspan=2>List of PDB id codes</th>
 
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</tr>
 
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<tr>
 
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<td colspan = "2" style="background-color: #eee">
 
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{{{PDB}}}
 
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</td>
 
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</tr>
 
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</table>
 
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</td></tr>
 
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</table>
 
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}}
 
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| header3    = Identifiers
 
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| label4      = [[Human Genome Organisation|Symbol{{#if:{{{AltSymbols|}}}|s}}]]
 
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| data4      = <span class="plainlinks">[https://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id={{{HGNCid}}} {{{Symbol}}}]</span>{{#if:{{{AltSymbols|}}}|&nbsp;{{{AltSymbols}}}}}
 
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| label5      = External IDs
 
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| data5      = {{#if:{{{OMIM|}}}|{{OMIM5|{{{OMIM}}} }} }} {{#if:{{{MGIid|}}}|{{MGI|{{{MGIid}}} }} }} {{#if:{{{Homologene|}}}|{{Homologene|{{{Homologene}}} }} }} {{#if:{{{IUPHAR|}}}|[[International Union of Basic and Clinical Pharmacology|IUPHAR]]: {{IUPHAR|{{{Symbol}}} }} }} {{#if:{{{ChEMBL|}}}|[[ChEMBL]]: <span class="plainlinks">[https://www.ebi.ac.uk/chembldb/index.php/target/inspect/CHEMBL{{{ChEMBL}}} {{{ChEMBL}}}]</span> }} {{#if:{{{Hs_EntrezGene|}}}|[[GeneCards]]: <span class="plainlinks">[https://www.genecards.org/cgi-bin/carddisp.pl?gene={{{Symbol}}} {{{Symbol}}} Gene]</span> }}
 
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| label6      = [[Enzyme Commission number|EC number]]
 
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| data6      = {{#if:{{{ECnumber|}}}|<span class="plainlinks" style="white-space: nowrap">[https://www.genome.jp/dbget-bin/www_bget?enzyme+{{#invoke:String|replace|{{{ECnumber}}}|,%s*|+|plain=false}} {{{ECnumber}}}]</span>}}
 
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| data7      = <table class="collapsible collapsed" style="border: none; padding: 0; margin: 0; width: 100%; text-align: left">
 
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<tr style="background-color: #ddd;">
 
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<th colspan=2 style="text-align: center">[[Gene ontology]]</th><!-- name of the project Gene Ontology -->
 
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</tr>
 
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{{#if:{{{Function|}}}|
 
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<tr>
 
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<th style="background-color: #c3fdb8">Molecular function</th>
 
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<td style="background-color: #eee">{{{Function}}}</td>
 
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</tr>
 
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}}
 
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{{#if:{{{Component|}}}|
 
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<tr>
 
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<th style="background-color: #c3fdb8">Cellular component</th>
 
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<td style="background-color: #eee">{{{Component}}}</td>
 
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</tr>
 
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}}
 
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{{#if:{{{Process|}}}|
 
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<tr>
 
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<th style="background-color: #c3fdb8">Biological process</th>
 
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<td style="background-color: #eee">{{{Process}}}</td>
 
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</tr>
 
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}}
 
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{{#if:{{{Hs_Uniprot|}}}|
 
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<tr>
 
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<td style="background-color: #eee;text-align:center;" colspan="2" >Sources: [http://amigo.geneontology.org/cgi-bin/amigo/gp-assoc.cgi?gp=UniProtKB:{{{Hs_Uniprot}}} Amigo] / [https://www.ebi.ac.uk/QuickGO/GProtein?ac={{{Hs_Uniprot}}} QuickGO]</td></tr>
 
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}}
 
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</table>
 
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| header8    = {{#if:{{{GeneAtlas_image1|}}}|RNA expression pattern}}
 
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| data9      = {{#invoke:InfoboxImage|InfoboxImage|image={{{GeneAtlas_image1|}}}|sizedefault=frameless|upright=1.14}}
 
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| data10      = {{#invoke:InfoboxImage|InfoboxImage|image={{{GeneAtlas_image2|}}}|sizedefault=frameless|upright=1.14}}
 
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| data11      = {{#invoke:InfoboxImage|InfoboxImage|image={{{GeneAtlas_image3|}}}|sizedefault=frameless|upright=1.14}}
 
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| data12      = {{#if:{{{GeneAtlas_image1|}}}|<span class="plainlinks">[http://biogps.org/gene/{{{Hs_EntrezGene}}}/ More reference expression data]</span>}}
 
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| header13    = {{#if:{{{Protein_domain_image|}}}|Protein domains}}
 
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| data14      = {{#invoke:InfoboxImage|InfoboxImage|image={{{Protein_domain_image|}}}|sizedefault=frameless|upright=1.14}}
 
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| header15    = Orthologs
 
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| data16      = {{{Orthologs|}}}
 
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| label17    = Species
 
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| data17a    = '''Human'''
 
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| data17b    = '''Mouse'''
 
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| label18    = [[Entrez]]
 
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| data18a    = {{#if:{{{Hs_EntrezGene|}}}|<span class="plainlinks" style="white-space: nowrap">[https://www.ncbi.nlm.nih.gov/gene/{{{Hs_EntrezGene}}} {{{Hs_EntrezGene}}}]</span>|n/a }}
 
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| data18b    = {{#if:{{{Mm_EntrezGene|}}}|<span class="plainlinks" style="white-space: nowrap">[https://www.ncbi.nlm.nih.gov/gene/{{{Mm_EntrezGene}}} {{{Mm_EntrezGene}}}]</span>|n/a }}
 
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| label19    = [[Ensembl]]
 
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| data19a    = {{#if:{{{Hs_Ensembl|}}}|<span class="plainlinks" style="white-space: nowrap">[http://www.ensembl.org/Homo_sapiens/geneview?gene={{{Hs_Ensembl}}};db=core {{{Hs_Ensembl}}}]</span>|n/a}}
 
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| data19b    = {{#if:{{{Mm_Ensembl|}}}|<span class="plainlinks" style="white-space: nowrap">[http://www.ensembl.org/Mus_musculus/geneview?gene={{{Mm_Ensembl}}};db=core {{{Mm_Ensembl}}}]</span>|n/a}}
 
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| label20    = [[UniProt]]
 
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| data20a    = {{#if:{{{Hs_Uniprot|}}}|{{Uniprot|{{{Hs_Uniprot}}}}}|n/a}}
 
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| data20b    = {{#if:{{{Mm_Uniprot|}}}|{{Uniprot|{{{Mm_Uniprot}}}}}|n/a}}
 
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| label21    = RefSeq (mRNA)
 
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| data21a    = {{#if:{{{Hs_RefseqmRNA|}}}|<span class="plainlinks" style="white-space: nowrap">[https://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val={{{Hs_RefseqmRNA}}} {{{Hs_RefseqmRNA}}}]</span>|n/a}}
 
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| data21b    = {{#if:{{{Mm_RefseqmRNA|}}}|<span class="plainlinks" style="white-space: nowrap">[https://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val={{{Mm_RefseqmRNA}}} {{{Mm_RefseqmRNA}}}]</span>|n/a}}
 
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| label22    = RefSeq (protein)
 
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| data22a    = {{#if:{{{Hs_RefseqProtein|}}}|<span class="plainlinks" style="white-space: nowrap">[https://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val={{{Hs_RefseqProtein}}} {{{Hs_RefseqProtein}}}]</span>|n/a}}
 
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| data22b    = {{#if:{{{Mm_RefseqProtein|}}}|<span class="plainlinks" style="white-space: nowrap">[https://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val={{{Mm_RefseqProtein}}} {{{Mm_RefseqProtein}}}]</span>|n/a}}
 
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| label23    = Location (UCSC)
 
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| data23a    = {{#ifexpr:{{#if:{{{Hs_GenLoc_chr|}}}|1|0}}*{{#if:{{{Hs_GenLoc_start|}}}|1|0}}*{{#if:{{{Hs_GenLoc_end|}}}|1|0}}|<span class="plainlinks" style="white-space: nowrap">[http://genome.ucsc.edu/cgi-bin/hgTracks?org=Human{{#if:{{{Hs_GenLoc_db|}}}|&db={{{Hs_GenLoc_db}}}|}}&position=chr{{{Hs_GenLoc_chr}}}:{{{Hs_GenLoc_start}}}-{{{Hs_GenLoc_end}}} Chr {{{Hs_GenLoc_chr}}}:<br />{{#expr:{{{Hs_GenLoc_start}}} / 1000000 round 2}} – {{#expr:{{{Hs_GenLoc_end}}} / 1000000 round 2}} Mb]</span>|n/a }}
 
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| data23b    = {{#ifexpr:{{#if:{{{Mm_GenLoc_chr|}}}|1|0}}*{{#if:{{{Mm_GenLoc_start|}}}|1|0}}*{{#if:{{{Mm_GenLoc_end|}}}|1|0}}|<span class="plainlinks" style="white-space: nowrap">[http://genome.ucsc.edu/cgi-bin/hgTracks?org=Mouse{{#if:{{{Mm_GenLoc_db|}}}|&db={{{Mm_GenLoc_db}}}|}}&position=chr{{{Mm_GenLoc_chr}}}:{{{Mm_GenLoc_start}}}-{{{Mm_GenLoc_end}}} Chr {{{Mm_GenLoc_chr}}}:<br />{{#expr:{{{Mm_GenLoc_start}}} / 1000000 round 2}} – {{#expr:{{{Mm_GenLoc_end}}} / 1000000 round 2}} Mb]</span>|n/a }}
 
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| label24    = [[PubMed]] search
 
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| data24a    = {{#if:{{{Hs_EntrezGene|}}}|<span class="plainlinks" style="white-space: nowrap">[https://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=Link&LinkName=gene_pubmed&from_uid={{{Hs_EntrezGene}}}]</span>|n/a }}
 
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| data24b    = {{#if:{{{Mm_EntrezGene|}}}|<span class="plainlinks" style="white-space: nowrap">[https://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=Link&LinkName=gene_pubmed&from_uid={{{Mm_EntrezGene}}}]</span>|n/a }}
 
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}}<includeonly>{{#if:{{{NotAProtein|}}}||{{#ifeq: {{{category|μ}}}|μ|{{#ifeq:{{NAMESPACE}}|Template|[[Category:Human protein templates]]|{{Main other|[[Category:Human proteins]]}}}}}}}}</includeonly><noinclude>{{documentation}}</noinclude>
 

Latest revision as of 16:33, 23 July 2019

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