Difference between revisions of "Template:Codon table"

From blackwiki
Jump to navigation Jump to search
(Addition of hyperlink to opal stop codon.)
imported>WOSlinker
(tidy style for better HTML5 compatibility)
Line 1: Line 1:
 
{| class="wikitable"
 
{| class="wikitable"
|bgcolor=#ffe75f| nonpolar
+
| style="background-color:#ffe75f;" | nonpolar
|bgcolor=#b3dec0| polar
+
| style="background-color:#b3dec0;" | polar
|bgcolor=#bbbfe0| basic
+
| style="background-color:#bbbfe0;" | basic
|bgcolor=#f8b7d3| acidic
+
| style="background-color:#f8b7d3;" | acidic
|bgcolor=#B0B0B0| (stop codon)
+
| style="background-color:#B0B0B0;" | (stop codon)
 
|}
 
|}
  
Line 21: Line 21:
 
!rowspan=4| {{{T|T}}}
 
!rowspan=4| {{{T|T}}}
 
| {{{T|T}}}{{{T|T}}}{{{T|T}}}
 
| {{{T|T}}}{{{T|T}}}{{{T|T}}}
|bgcolor=#ffe75f rowspan=2| (Phe/F) [[Phenylalanine]]
+
|rowspan=2 style="background-color:#ffe75f" | (Phe/F) [[Phenylalanine]]
 
| {{{T|T}}}C{{{T|T}}}
 
| {{{T|T}}}C{{{T|T}}}
|bgcolor=#b3dec0 rowspan=4| (Ser/S) [[Serine]]
+
|rowspan=4 style="background-color:#b3dec0" | (Ser/S) [[Serine]]
 
| {{{T|T}}}A{{{T|T}}}
 
| {{{T|T}}}A{{{T|T}}}
|bgcolor=#b3dec0 rowspan=2| (Tyr/Y) [[Tyrosine]]
+
|rowspan=2 style="background-color:#b3dec0" | (Tyr/Y) [[Tyrosine]]
 
| {{{T|T}}}G{{{T|T}}}
 
| {{{T|T}}}G{{{T|T}}}
|bgcolor=#b3dec0 rowspan=2| (Cys/C) [[Cysteine]]
+
|rowspan=2 style="background-color:#b3dec0" | (Cys/C) [[Cysteine]]
 
! {{{T|T}}}
 
! {{{T|T}}}
 
|-
 
|-
Line 37: Line 37:
 
|-
 
|-
 
| {{{T|T}}}{{{T|T}}}A
 
| {{{T|T}}}{{{T|T}}}A
|bgcolor=#ffe75f rowspan=6| (Leu/L) [[Leucine]]
+
|rowspan=6 style="background-color:#ffe75f" | (Leu/L) [[Leucine]]
 
| {{{T|T}}}CA
 
| {{{T|T}}}CA
 
| {{{T|T}}}AA
 
| {{{T|T}}}AA
|bgcolor=#B0B0B0| [[Stop codon|Stop]] (''Ochre'')
+
| style="background-color:#B0B0B0;" | [[Stop codon|Stop]] (''Ochre'')
 
| {{{T|T}}}GA
 
| {{{T|T}}}GA
|bgcolor=#B0B0B0 | [[Stop codon|Stop]] (''Opal'')
+
| style="background-color:#B0B0B0;" | [[Stop codon|Stop]] (''Opal'')
 
! A
 
! A
 
|-
 
|-
Line 48: Line 48:
 
| {{{T|T}}}CG
 
| {{{T|T}}}CG
 
| {{{T|T}}}AG
 
| {{{T|T}}}AG
|bgcolor=#B0B0B0| [[Stop codon|Stop]] (''Amber'')
+
| style="background-color:#B0B0B0;" | [[Stop codon|Stop]] (''Amber'')
 
| {{{T|T}}}GG
 
| {{{T|T}}}GG
|bgcolor=#ffe75f| (Trp/W) [[Tryptophan]]&nbsp;&nbsp;&nbsp;&nbsp;<!-- to make the columns roughly the same width -->
+
| style="background-color:#ffe75f;" | (Trp/W) [[Tryptophan]]&nbsp;&nbsp;&nbsp;&nbsp;<!-- to make the columns roughly the same width -->
 
! G
 
! G
 
|-
 
|-
Line 57: Line 57:
 
| C{{{T|T}}}{{{T|T}}}
 
| C{{{T|T}}}{{{T|T}}}
 
| CC{{{T|T}}}
 
| CC{{{T|T}}}
|bgcolor=#ffe75f rowspan=4| (Pro/P) [[Proline]]
+
|rowspan=4 style="background-color:#ffe75f" | (Pro/P) [[Proline]]
 
| CA{{{T|T}}}
 
| CA{{{T|T}}}
|bgcolor=#bbbfe0 rowspan=2| (His/H) [[Histidine]]
+
|rowspan=2 style="background-color:#bbbfe0" | (His/H) [[Histidine]]
 
|CG{{{T|T}}}
 
|CG{{{T|T}}}
|bgcolor=#bbbfe0 rowspan=4| (Arg/R) [[Arginine]]
+
|rowspan=4 style="background-color:#bbbfe0" | (Arg/R) [[Arginine]]
 
! {{{T|T}}}
 
! {{{T|T}}}
 
|-
 
|-
Line 73: Line 73:
 
|CCA
 
|CCA
 
|CAA
 
|CAA
|bgcolor=#b3dec0 rowspan=2| (Gln/Q) [[Glutamine]]
+
|rowspan=2 style="background-color:#b3dec0" | (Gln/Q) [[Glutamine]]
 
|CGA
 
|CGA
 
! A
 
! A
Line 86: Line 86:
 
! rowspan="4" | A
 
! rowspan="4" | A
 
|A{{{T|T}}}{{{T|T}}}
 
|A{{{T|T}}}{{{T|T}}}
|bgcolor=#ffe75f rowspan=3| (Ile/I) [[Isoleucine]]
+
|rowspan=3 style="background-color:#ffe75f" | (Ile/I) [[Isoleucine]]
 
|AC{{{T|T}}}
 
|AC{{{T|T}}}
|bgcolor=#b3dec0 rowspan=4| (Thr/T) [[Threonine]]&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<!-- to make the columns roughly the same width -->
+
|rowspan=4 style="background-color:#b3dec0" | (Thr/T) [[Threonine]]&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<!-- to make the columns roughly the same width -->
 
|AA{{{T|T}}}
 
|AA{{{T|T}}}
|bgcolor=#b3dec0 rowspan=2| (Asn/N) [[Asparagine]]
+
|rowspan=2 style="background-color:#b3dec0" | (Asn/N) [[Asparagine]]
 
|AG{{{T|T}}}
 
|AG{{{T|T}}}
|bgcolor=#b3dec0 rowspan=2| (Ser/S) [[Serine]]
+
|rowspan=2 style="background-color:#b3dec0" | (Ser/S) [[Serine]]
 
! {{{T|T}}}
 
! {{{T|T}}}
 
|-
 
|-
Line 104: Line 104:
 
|ACA
 
|ACA
 
|AAA
 
|AAA
|bgcolor=#bbbfe0 rowspan=2| (Lys/K) [[Lysine]]
+
|rowspan=2 style="background-color:#bbbfe0" | (Lys/K) [[Lysine]]
 
|AGA
 
|AGA
|bgcolor=#bbbfe0 rowspan=2| (Arg/R) [[Arginine]]
+
|rowspan=2 style="background-color:#bbbfe0" | (Arg/R) [[Arginine]]
 
! A
 
! A
 
|-
 
|-
 
|A{{{T|T}}}G{{ref label|methionine|A|A}}  
 
|A{{{T|T}}}G{{ref label|methionine|A|A}}  
|bgcolor=#ffe75f| (Met/M) [[Methionine]]
+
| style="background-color:#ffe75f;" | (Met/M) [[Methionine]]
 
|ACG
 
|ACG
 
|AAG
 
|AAG
Line 119: Line 119:
 
! rowspan="4" | G
 
! rowspan="4" | G
 
|G{{{T|T}}}{{{T|T}}}
 
|G{{{T|T}}}{{{T|T}}}
|bgcolor=#ffe75f rowspan=4| (Val/V) [[Valine]]
+
|rowspan=4 style="background-color:#ffe75f" | (Val/V) [[Valine]]
 
|GC{{{T|T}}}
 
|GC{{{T|T}}}
|bgcolor=#ffe75f rowspan=4| (Ala/A) [[Alanine]]
+
|rowspan=4 style="background-color:#ffe75f" | (Ala/A) [[Alanine]]
 
|GA{{{T|T}}}
 
|GA{{{T|T}}}
|bgcolor=#f8b7d3 rowspan=2| (Asp/D) [[Aspartic acid]]
+
|rowspan=2 style="background-color:#f8b7d3" | (Asp/D) [[Aspartic acid]]
 
|GG{{{T|T}}}
 
|GG{{{T|T}}}
|bgcolor=#ffe75f rowspan=4| (Gly/G) [[Glycine]]
+
|rowspan=4 style="background-color:#ffe75f" | (Gly/G) [[Glycine]]
 
! {{{T|T}}}
 
! {{{T|T}}}
 
|-
 
|-
Line 137: Line 137:
 
|GCA
 
|GCA
 
|GAA
 
|GAA
|bgcolor=#f8b7d3 rowspan=2| (Glu/E) [[Glutamic acid]]
+
|rowspan=2 style="background-color:#f8b7d3" | (Glu/E) [[Glutamic acid]]
 
|GGA
 
|GGA
 
! A
 
! A

Revision as of 20:01, 13 November 2015

nonpolar polar basic acidic (stop codon)
Standard genetic code
1st
base
2nd base 3rd
base
T C A G
T TTT (Phe/F) Phenylalanine TCT (Ser/S) Serine TAT (Tyr/Y) Tyrosine TGT (Cys/C) Cysteine T
TTC TCC TAC TGC C
TTA (Leu/L) Leucine TCA TAA Stop (Ochre) TGA Stop (Opal) A
TTG TCG TAG Stop (Amber) TGG (Trp/W) Tryptophan     G
C CTT CCT (Pro/P) Proline CAT (His/H) Histidine CGT (Arg/R) Arginine T
CTC CCC CAC CGC C
CTA CCA CAA (Gln/Q) Glutamine CGA A
CTG CCG CAG CGG G
A ATT (Ile/I) Isoleucine ACT (Thr/T) Threonine         AAT (Asn/N) Asparagine AGT (Ser/S) Serine T
ATC ACC AAC AGC C
ATA ACA AAA (Lys/K) Lysine AGA (Arg/R) Arginine A
ATGTemplate:Ref label (Met/M) Methionine ACG AAG AGG G
G GTT (Val/V) Valine GCT (Ala/A) Alanine GAT (Asp/D) Aspartic acid GGT (Gly/G) Glycine T
GTC GCC GAC GGC C
GTA GCA GAA (Glu/E) Glutamic acid GGA A
GTG GCG GAG GGG G
Template:Note label The codon ATG both codes for methionine and serves as an initiation site: the first ATG in an mRNA's coding region is where translation into protein begins.[1]
Template documentation

This is the standard or universal genetic code.

This table is found in both DNA Codon Table and Genetic Code (And probably a few other places), so I'm pulling it out so it can be common. By default it's the DNA code (using the letter T for Thymine); use template parameter "T=U" to make it the RNA code (using U for Uracil). See also Template:Inverse codon table.

  1. Nakamoto T (March 2009). "Evolution and the universality of the mechanism of initiation of protein synthesis". Gene. 432 (1–2): 1–6. doi:10.1016/j.gene.2008.11.001. PMID 19056476.