Difference between revisions of "Template:Codon table"

From blackwiki
Jump to navigation Jump to search
 
Line 1: Line 1:
{| class="wikitable" style="border: none; background: none; text-align: center;"
+
{| class="wikitable" style="border:none; background:none; text-align:center;"
 
| [[Amino acids|Amino-acid]] biochemical properties  
 
| [[Amino acids|Amino-acid]] biochemical properties  
 
| style="background-color:#ffe75f; width: 50px;" | Nonpolar
 
| style="background-color:#ffe75f; width: 50px;" | Nonpolar
Line 5: Line 5:
 
| style="background-color:#bbbfe0; width: 50px;" | Basic
 
| style="background-color:#bbbfe0; width: 50px;" | Basic
 
| style="background-color:#f8b7d3; width: 50px;" | Acidic
 
| style="background-color:#f8b7d3; width: 50px;" | Acidic
| style="border: none; background: none; width: 100px;" |
+
| style="border:none; background:none; width: 100px;" |
 
| style="background-color:#B0B0B0;" | Termination: stop codon
 
| style="background-color:#B0B0B0;" | Termination: stop codon
 
|}
 
|}
Line 11: Line 11:
 
{| class="wikitable"
 
{| class="wikitable"
 
|+ Standard genetic code
 
|+ Standard genetic code
!rowspan=2| 1st<br/>base
+
! rowspan=2 | 1st<br/>base
!colspan=8| 2nd base
+
! colspan=8 | 2nd base
!rowspan=2| 3rd<br/>base
+
! rowspan=2 | 3rd<br/>base
 
|-
 
|-
!colspan=2| {{{T|T}}}
+
! colspan=2 style="width:150px;" | {{{T|T}}}
!colspan=2| C
+
! colspan=2 style="width:150px;" | C
!colspan=2| A
+
! colspan=2 style="width:150px;" | A
!colspan=2| G
+
! colspan=2 style="width:150px;" | G
 +
 
 
|-
 
|-
 
+
! rowspan=4 | {{{T|T}}}
!rowspan=4| {{{T|T}}}
 
 
| {{{T|T}}}{{{T|T}}}{{{T|T}}}
 
| {{{T|T}}}{{{T|T}}}{{{T|T}}}
 
|rowspan=2 style="background-color:#ffe75f" | (Phe/F) [[Phenylalanine]]
 
|rowspan=2 style="background-color:#ffe75f" | (Phe/F) [[Phenylalanine]]
Line 52: Line 52:
 
| style="background-color:#B0B0B0;" | [[Stop codon|Stop]] (''Amber''){{Ref label|stopcodon3|B|none}}
 
| style="background-color:#B0B0B0;" | [[Stop codon|Stop]] (''Amber''){{Ref label|stopcodon3|B|none}}
 
| {{{T|T}}}GG
 
| {{{T|T}}}GG
| style="background-color:#ffe75f;" | (Trp/W) [[Tryptophan]]&nbsp;&nbsp;&nbsp;&nbsp;<!-- to make the columns roughly the same width -->
+
| style="background-color:#ffe75f;" | (Trp/W) [[Tryptophan]]
 
! G
 
! G
 
|-
 
|-
Line 90: Line 90:
 
|rowspan=3 style="background-color:#ffe75f" | (Ile/I) [[Isoleucine]]
 
|rowspan=3 style="background-color:#ffe75f" | (Ile/I) [[Isoleucine]]
 
|AC{{{T|T}}}
 
|AC{{{T|T}}}
|rowspan=4 style="background-color:#b3dec0" | (Thr/T) [[Threonine]]&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<!-- to make the columns roughly the same width -->
+
|rowspan=4 style="background-color:#b3dec0" | (Thr/T) [[Threonine]]
 
|AA{{{T|T}}}
 
|AA{{{T|T}}}
 
|rowspan=2 style="background-color:#b3dec0" | (Asn/N) [[Asparagine]]
 
|rowspan=2 style="background-color:#b3dec0" | (Asn/N) [[Asparagine]]

Latest revision as of 21:19, 22 April 2020

Amino-acid biochemical properties Nonpolar Polar Basic Acidic Termination: stop codon
Standard genetic code
1st
base
2nd base 3rd
base
T C A G
T TTT (Phe/F) Phenylalanine TCT (Ser/S) Serine TAT (Tyr/Y) Tyrosine TGT (Cys/C) Cysteine T
TTC TCC TAC TGC C
TTA (Leu/L) Leucine TCA TAA Stop (Ochre)Template:Ref label TGA Stop (Opal)Template:Ref label A
TTGTemplate:Ref label TCG TAG Stop (Amber)Template:Ref label TGG (Trp/W) Tryptophan G
C CTT CCT (Pro/P) Proline CAT (His/H) Histidine CGT (Arg/R) Arginine T
CTC CCC CAC CGC C
CTA CCA CAA (Gln/Q) Glutamine CGA A
CTGTemplate:Ref label CCG CAG CGG G
A ATT (Ile/I) Isoleucine ACT (Thr/T) Threonine AAT (Asn/N) Asparagine AGT (Ser/S) Serine T
ATC ACC AAC AGC C
ATA ACA AAA (Lys/K) Lysine AGA (Arg/R) Arginine A
ATGTemplate:Ref label (Met/M) Methionine ACG AAG AGG G
G GTT (Val/V) Valine GCT (Ala/A) Alanine GAT (Asp/D) Aspartic acid GGT (Gly/G) Glycine T
GTC GCC GAC GGC C
GTA GCA GAA (Glu/E) Glutamic acid GGA A
GTG GCG GAG GGG G
Template:Note label The codon ATG both codes for methionine and serves as an initiation site: the first ATG in an mRNA's coding region is where translation into protein begins.[1] The other start codons listed by GenBank are rare in eukaryotes and generally codes for Met/fMet.[2]
B Template:Note labelTemplate:Note labelTemplate:Note label The historical basis for designating the stop codons as amber, ochre and opal is described in an autobiography by Sydney Brenner[3] and in a historical article by Bob Edgar.[4]
Template documentation

This is the standard or universal genetic code.

This table is found in both DNA Codon Table and Genetic Code (And probably a few other places), so I'm pulling it out so it can be common. By default it's the DNA code (using the letter T for Thymine); use template parameter "T=U" to make it the RNA code (using U for Uracil). See also Template:Inverse codon table.

  1. Nakamoto T (March 2009). "Evolution and the universality of the mechanism of initiation of protein synthesis". Gene. 432 (1–2): 1–6. doi:10.1016/j.gene.2008.11.001. PMID 19056476.
  2. Blattner, F. R.; Plunkett g, G.; Bloch, C. A.; Perna, N. T.; Burland, V.; Riley, M.; Collado-Vides, J.; Glasner, J. D.; Rode, C. K.; Mayhew, G. F.; Gregor, J.; Davis, N. W.; Kirkpatrick, H. A.; Goeden, M. A.; Rose, D. J.; Mau, B.; Shao, Y. (1997). "The Complete Genome Sequence of Escherichia coli K-12". Science. 277 (5331): 1453–1462. doi:10.1126/science.277.5331.1453. PMID 9278503.
  3. Brenner S. A Life in Science (2001) Published by Biomed Central Limited ISBN 0-9540278-0-9 see pages 101-104
  4. Edgar B (2004). "The genome of bacteriophage T4: an archeological dig". Genetics. 168 (2): 575–82. PMC 1448817. PMID 15514035. see pages 580-581