Difference between revisions of "Template:ATLAS"

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blackwiki>Mus4musculus
blackwiki>Mus4musculus
(Replaced content with '{| id="proteinInfoBox" class="infobox" style="background:#fff; width:280px;" |- style="text-align:center; line-height:1;" {{#if: {{{caption|}}} | {{!}} colspan=...')
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| align="center" colspan="3" | <div style="font-size:medium; line-height:167%;">ol-{{{geneid}}}-lo</div>
 
| align="center" colspan="3" | <div style="font-size:medium; line-height:167%;">ol-{{{geneid}}}-lo</div>
 
|-
 
|-
{{#if: {{{image|}}}
+
|enee
  | {{!}} align="center" colspan="3" {{!}} [[Image:{{{image}}}|250px]]
 
    {{#if: {{{image_source|}}}
 
            |
 
                {{!}}-
 
                {{!}} align="right" colspan="3" {{!}} <small>'''{{{image_source}}}'''</small>
 
            |
 
    }}
 
  | <includeonly>[[Category:Protein pages needing a picture]]</includeonly>
 
}}
 
 
|-
 
|-
{{#if: {{{PDB|}}}
+
|menee
  | {{!}} align="right" colspan="3" style="border-top:2px solid #ddd" {{!}} <small>Available structures: {{{PDB}}}</small>
 
  |
 
}}
 
 
|-
 
|-
| align="center" colspan="3" style="background:#ddd" | '''Identifiers'''
+
|monee
 
|-
 
|-
| style="background:#C3FDB8" | {{#if:{{{AltSymbols|}}}|[[HUGO|Symbols]]|[[HUGO|Symbol]]}}
+
|mow
| colspan="2" align="center" style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd"| <span class="plainlinks">[http://www.genenames.org/data/hgnc_data.php?hgnc_id={{{HGNCid}}} {{{Symbol}}}]{{{AltSymbols}}}</span>
 
 
|-
 
|-
{{#if: {{{OMIM|}}}{{{MGIid|}}}{{{Homologene|}}}{{{IUPHAR|}}} |
 
{{!}} style="background:#C3FDB8" {{!}} External IDs
 
{{!}} colspan="2" align="center" style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd"{{!}} {{#if:{{{OMIM|}}}|{{OMIM5|{{{OMIM}}}}}|}} {{#if:{{{MGIid|}}}|{{MGI|{{{MGIid}}}}}|}} {{#if:{{{Homologene|}}}|{{Homologene|{{{Homologene}}}}}|}} {{#if:{{{IUPHAR|}}}|{{IUPHAR2|{{{Symbol}}}}}|}}  }}
 
|-
 
{{#if: {{{ECnumber|}}} |
 
{{!}} style="background:#C3FDB8" {{!}} [[EC number]]
 
{{!}} colspan="2" align="center" style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd"{{!}} <span class="plainlinks">[http://www.genome.jp/dbget-bin/www_bget?enzyme+{{{ECnumber}}} {{{ECnumber}}}]</span> }}
 
|-
 
| align="center" colspan="3" cellpadding=0 |
 
{| class="collapsible collapsed"  border=0 width=100%
 
! colspan=3 style="background:#ddd" |'''[[Gene ontology]]'''
 
|-
 
{{#if: {{{Function|}}} |
 
{{!}} style="background:#C3FDB8" align="left" {{!}} '''Molecular function:'''
 
{{!}} colspan="2" align="left" style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd" {{!}} {{{Function}}} }}
 
|-
 
{{#if: {{{Component|}}} |
 
{{!}} style="background:#C3FDB8" align="left" {{!}} '''Cellular component:'''
 
{{!}} colspan="2" align="left" style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd" {{!}} {{{Component}}} }}
 
|-
 
{{#if: {{{Process|}}} |
 
{{!}} style="background:#C3FDB8" align="left" {{!}} '''Biological process:'''
 
{{!}} colspan="2" align="left" style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd" {{!}} {{{Process}}} }}
 
|}
 
|-
 
{{#if: {{{GeneAtlas_image1|}}} |
 
{{!}} align="center" colspan="3" style="background:#ddd" {{!}} '''RNA expression pattern'''
 
{{!}}-
 
{{!}} colspan="3" align="center" style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd" {{!}} {{#if: {{{GeneAtlas_image1|}}} | <p>[[Image:{{{GeneAtlas_image1}}} | 250px]] </p>
 
}} {{#if: {{{GeneAtlas_image2|}}} | <p>[[Image:{{{GeneAtlas_image2}}} | 250px]] </p>
 
}} {{#if: {{{GeneAtlas_image3|}}} | <p>[[Image:{{{GeneAtlas_image3}}} | 250px]] </p> }}
 
<span class="plainlinks">[http://biogps.gnf.org/?query=HGNC:{{{HGNCid}}} More reference expression data]</span>
 
}}
 
<!-- {{#if: {{{GeneAtlas_image|}}} |
 
{{!}} colspan="3" align="center" style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd" {{!}} {{{GeneAtlas_image}}}
 
<span class="plainlinks">[http://biogps.gnf.org/?query=HGNC:{{{HGNCid}}} More reference expression data]</span>
 
}}
 
-->
 
|-
 
{{#if: {{{Protein_domain_image|}}} |
 
{{!}} align="center" colspan="3" style="background:#ddd" {{!}} '''Protein domains'''
 
{{!}}-
 
{{!}} colspan="3" align="center" style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd" {{!}} <p>[[{{{Protein_domain_image}}} | 250px]] </p> }}
 
|-
 
| align="center" colspan="3" style="background:#ddd" | '''Orthologs'''
 
|-
 
{{#if: {{{Orthologs|}}} |
 
{{!}} {{{Orthologs}}} |
 
{{!}}
 
{{!}} style="background:#C3FDB8" {{!}} Human
 
{{!}} style="background:#C3FDB8" {{!}} Mouse
 
<!--
 
{{#if:
 
  {{ #if: Human | | }}
 
  {{ #if: Mouse | | }}
 
  | something
 
  | nothing
 
}}
 
-->
 
{{ #if: {{{Hs_EntrezGene|}}}{{{Mm_EntrezGene|}}}
 
  | {{!}}-
 
    {{!}} style="background:#C3FDB8" {{!}} [[Entrez]]
 
    {{!}} style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd" {{!}} {{ #if: {{{Hs_EntrezGene|}}} | <span class="plainlinks">[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=retrieve&dopt=default&list_uids={{{Hs_EntrezGene}}}&rn=1 {{{Hs_EntrezGene}}}]</span> | n/a }}
 
    {{!}} style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd" {{!}} {{ #if: {{{Mm_EntrezGene|}}} | <span class="plainlinks">[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=retrieve&dopt=default&list_uids={{{Mm_EntrezGene}}}&rn=1 {{{Mm_EntrezGene}}}]</span> | n/a }}
 
  |}}
 
{{ #if: {{{Hs_Ensembl|}}}{{{Mm_Ensembl|}}}
 
  | {{!}}-
 
    {{!}} style="background:#C3FDB8" {{!}} [[Ensembl]]
 
    {{!}} style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd" {{!}} {{ #if: {{{Hs_Ensembl|}}} | <span class="plainlinks"><small><small>[http://www.ensembl.org/Homo_sapiens/geneview?gene={{{Hs_Ensembl}}};db=core {{{Hs_Ensembl}}}]</small></small></span> | n/a }}
 
    {{!}} style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd" {{!}} {{ #if: {{{Mm_Ensembl|}}} | <span class="plainlinks"><small><small>[http://www.ensembl.org/Mus_musculus/geneview?gene={{{Mm_Ensembl}}};db=core {{{Mm_Ensembl}}}]</small></small></span> | n/a }}
 
  |}}
 
{{ #if: {{{Hs_Uniprot|}}}{{{Mm_Uniprot|}}}
 
  | {{!}}-
 
    {{!}} style="background:#C3FDB8" {{!}} [[Uniprot]]
 
    {{!}} style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd" {{!}} {{ #if: {{{Hs_Uniprot|}}} | {{Uniprot|{{{Hs_Uniprot}}}}} | n/a }}
 
    {{!}} style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd" {{!}} {{ #if: {{{Mm_Uniprot|}}} | {{Uniprot|{{{Mm_Uniprot}}}}} | n/a }}
 
  |}}
 
{{ #if: {{{Hs_RefseqmRNA|}}}{{{Hs_RefseqProtein|}}}{{{Mm_RefseqmRNA|}}}{{{Mm_RefseqProtein|}}}
 
  | {{!}}-
 
    {{!}} style="background:#C3FDB8" {{!}} Refseq
 
<!-- I apologize to whomever may be trying to sort through these next two lines... it seems that putting a newline character was causing serious formatting issues.  Only after all of the newline characters were removed did the results look correct. -->
 
    {{!}} style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd" {{!}} <span class="plainlinks">{{ #if: {{{Hs_RefseqmRNA|}}}| [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val={{{Hs_RefseqmRNA}}} {{{Hs_RefseqmRNA}}}]| n/a }} <small>(mRNA)</small><br> {{ #if: {{{Hs_RefseqProtein|}}}|[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val={{{Hs_RefseqProtein}}} {{{Hs_RefseqProtein}}}]| n/a }} <small>(protein)</small> </span>
 
    {{!}} style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd" {{!}}<span class="plainlinks">{{ #if: {{{Mm_RefseqmRNA|}}}| [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val={{{Mm_RefseqmRNA}}} {{{Mm_RefseqmRNA}}}] | n/a }} <small>(mRNA)</small><br> {{ #if: {{{Mm_RefseqProtein|}}}| [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val={{{Mm_RefseqProtein}}} {{{Mm_RefseqProtein}}}]| n/a }} <small>(protein)</small></span>
 
  | }}
 
<!--  this is a repeat of the above two lines, but in a much more reader friendly format.
 
 
    {{!}} style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd" {{!}}
 
    <span class="plainlinks">
 
    {{ #if: {{{Hs_RefseqmRNA|}}}
 
        | [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val={{{Hs_RefseqmRNA}}} {{{Hs_RefseqmRNA}}}]
 
        | n/a }}
 
    <small>(mRNA)</small><br>
 
    {{ #if: {{{Hs_RefseqProtein|}}}
 
        | [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val={{{Hs_RefseqProtein}}} {{{Hs_RefseqProtein}}}]
 
        | n/a }}
 
    <small>(protein)</small>
 
    </span>
 
    {{!}} style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd" {{!}}
 
    <span class="plainlinks">
 
    {{ #if: {{{Mm_RefseqmRNA|}}}
 
        | [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val={{{Mm_RefseqmRNA}}} {{{Mm_RefseqmRNA}}}]
 
        | n/a }}
 
    <small>(mRNA)</small><br>
 
    {{ #if: {{{Mm_RefseqProtein|}}}
 
        | [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val={{{Mm_RefseqProtein}}} {{{Mm_RefseqProtein}}}]
 
        | n/a }}
 
    <small>(protein)</small>
 
    </span>
 
-->
 
{{ #if: {{{Hs_GenLoc_chr|}}}{{{Hs_GenLoc_start|}}}{{{Hs_GenLoc_end|}}}{{{Mm_GenLoc_chr|}}}{{{Mm_GenLoc_start|}}}{{{Mm_GenLoc_end|}}}
 
  | {{!}}-
 
    {{!}} style="background:#C3FDB8" {{!}} Location
 
<!-- reader friendly version
 
    {{#if: {{{Hs_GenLoc_chr|}}}
 
      | {{#if: {{{Hs_GenLoc_start|}}}
 
          | {{#if: {{{Hs_GenLoc_end|}}}
 
              | {{!}} style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd"{{!}}
 
                <span class="plainlinks">
 
                [http://genome.ucsc.edu/cgi-bin/hgTracks?org=Human{{ #if: {{{Hs_GenLoc_db|}}} |&db={{{Hs_GenLoc_db}}}|}}
 
                &position=chr{{{Hs_GenLoc_chr}}}:{{{Hs_GenLoc_start}}}-{{{Hs_GenLoc_end}}}
 
                Chr {{{Hs_GenLoc_chr}}}:
 
                {{#expr: {{{Hs_GenLoc_start}}} / 1000000 round 2}} -
 
                {{#expr: {{{Hs_GenLoc_end}}} / 1000000 round 2}} Mb]
 
                </span>
 
                |{{!}} style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd"{{!}} n/a }}
 
            |{{!}} style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd"{{!}} n/a }}
 
        |{{!}} style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd"{{!}} n/a }}
 
-->
 
    {{#if: {{{Hs_GenLoc_chr|}}}
 
      | {{#if: {{{Hs_GenLoc_start|}}}
 
          | {{#if: {{{Hs_GenLoc_end|}}}
 
              | {{!}} style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd"{{!}} <span class="plainlinks"> [http://genome.ucsc.edu/cgi-bin/hgTracks?org=Human{{ #if: {{{Hs_GenLoc_db|}}} |&db={{{Hs_GenLoc_db}}}|}}&position=chr{{{Hs_GenLoc_chr}}}:{{{Hs_GenLoc_start}}}-{{{Hs_GenLoc_end}}} Chr {{{Hs_GenLoc_chr}}}: {{#expr: {{{Hs_GenLoc_start}}} / 1000000 round 2}} - {{#expr: {{{Hs_GenLoc_end}}} / 1000000 round 2}} Mb] </span>
 
                |{{!}} style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd"{{!}} n/a }}
 
            |{{!}} style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd"{{!}} n/a }}
 
        |{{!}} style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd"{{!}} n/a }}
 
<!-- reader friendly version:
 
    {{#if: {{{Mm_GenLoc_chr|}}}
 
      | {{#if: {{{Mm_GenLoc_start|}}}
 
          | {{#if: {{{Mm_GenLoc_end|}}}
 
              | {{!}} style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd"{{!}}
 
                <span class="plainlinks">
 
                [http://genome.ucsc.edu/cgi-bin/hgTracks?org=Mouse{{ #if: {{{Mm_GenLoc_db|}}} |&db={{{Mm_GenLoc_db}}}|}}
 
                &position=chr{{{Mm_GenLoc_chr}}}:{{{Mm_GenLoc_start}}}-{{{Mm_GenLoc_end}}}
 
                Chr {{{Mm_GenLoc_chr}}}:
 
                {{#expr: {{{Mm_GenLoc_start}}} / 1000000 round 2}} -
 
                {{#expr: {{{Mm_GenLoc_end}}} / 1000000 round 2}} Mb]
 
                </span>
 
                |{{!}} style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd"{{!}} n/a }}
 
            |{{!}} style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd"{{!}} n/a }}
 
        |{{!}} style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd"{{!}} n/a }}
 
-->
 
    {{#if: {{{Mm_GenLoc_chr|}}}
 
      | {{#if: {{{Mm_GenLoc_start|}}}
 
          | {{#if: {{{Mm_GenLoc_end|}}}
 
              | {{!}} style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd"{{!}} <span class="plainlinks"> [http://genome.ucsc.edu/cgi-bin/hgTracks?org=Mouse{{ #if: {{{Mm_GenLoc_db|}}} |&db={{{Mm_GenLoc_db}}}|}}&position=chr{{{Mm_GenLoc_chr}}}:{{{Mm_GenLoc_start}}}-{{{Mm_GenLoc_end}}} Chr {{{Mm_GenLoc_chr}}}: {{#expr: {{{Mm_GenLoc_start}}} / 1000000 round 2}} -  {{#expr: {{{Mm_GenLoc_end}}} / 1000000 round 2}} Mb] </span>
 
                |{{!}} style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd"{{!}} n/a }}
 
            |{{!}} style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd"{{!}} n/a }}
 
        |{{!}} style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd"{{!}} n/a }}
 
  |}}
 
{{!}}-
 
{{ #if: {{{Hs_EntrezGene|}}}{{{Mm_EntrezGene|}}}
 
  | {{!}}-
 
    {{!}} style="background:#C3FDB8" {{!}} [[Pubmed]] search
 
    {{!}} style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd" {{!}} {{ #if: {{{Hs_EntrezGene|}}} | <span class="plainlinks">[http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=Link&LinkName=gene_pubmed&from_uid={{{Hs_EntrezGene}}}]</span> | n/a }}
 
    {{!}} style="background:#eee; border-top:2px solid #ddd; border-right:2px solid #ddd" {{!}} {{ #if: {{{Mm_EntrezGene|}}} | <span class="plainlinks">[http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=Link&LinkName=gene_pubmed&from_uid={{{Mm_EntrezGene}}}]</span> | n/a }}
 
  |}}
 
}}
 
|}<includeonly>{{#ifeq:{{{category|μ}}}|μ|[[Category:Human proteins]]}}</includeonly><noinclude>
 
{{pp-template}}
 
{{documentation}}
 
</noinclude>
 

Revision as of 13:20, 7 September 2009

ol-{{{geneid}}}-lo
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menee
monee
mow