Difference between revisions of "Template:Codon table"
Jump to navigation
Jump to search
Template documentation
imported>Manudouz m (Separate the stop codon from the color chart of amino acids.) |
imported>PhiLiP (Moved from DNA codon table: Special:Diff/766344111) |
||
| Line 41: | Line 41: | ||
|rowspan=6 style="background-color:#ffe75f" | (Leu/L) [[Leucine]] | |rowspan=6 style="background-color:#ffe75f" | (Leu/L) [[Leucine]] | ||
| {{{T|T}}}CA | | {{{T|T}}}CA | ||
| − | | {{{T|T}}}AA | + | | {{{T|T}}}AA{{Ref label|stopcodon1|B|none}} |
| style="background-color:#B0B0B0;" | [[Stop codon|Stop]] (''Ochre'') | | style="background-color:#B0B0B0;" | [[Stop codon|Stop]] (''Ochre'') | ||
| − | | {{{T|T}}}GA | + | | {{{T|T}}}GA{{Ref label|stopcodon2|B|none}} |
| style="background-color:#B0B0B0;" | [[Stop codon|Stop]] (''Opal'') | | style="background-color:#B0B0B0;" | [[Stop codon|Stop]] (''Opal'') | ||
! A | ! A | ||
| Line 49: | Line 49: | ||
| {{{T|T}}}{{{T|T}}}G | | {{{T|T}}}{{{T|T}}}G | ||
| {{{T|T}}}CG | | {{{T|T}}}CG | ||
| − | | {{{T|T}}}AG | + | | {{{T|T}}}AG{{Ref label|stopcodon3|B|none}} |
| style="background-color:#B0B0B0;" | [[Stop codon|Stop]] (''Amber'') | | style="background-color:#B0B0B0;" | [[Stop codon|Stop]] (''Amber'') | ||
| {{{T|T}}}GG | | {{{T|T}}}GG | ||
| Line 150: | Line 150: | ||
|- | |- | ||
|} | |} | ||
| − | :{{note label|methionine|A|A}} The codon A{{{T|T}}}G both codes for methionine and serves as an initiation site: the first A{{{T|T}}}G in an [[mRNA]]'s coding region is where translation into protein begins.<ref name="pmid19056476">{{cite journal |author=Nakamoto T |title=Evolution and the universality of the mechanism of initiation of protein synthesis |journal=Gene |volume=432 |issue=1–2 |pages=1–6 | date=March 2009 |pmid=19056476 |doi=10.1016/j.gene.2008.11.001}}</ref><noinclude> | + | :{{note label|methionine|A|A}} The codon A{{{T|T}}}G both codes for methionine and serves as an initiation site: the first A{{{T|T}}}G in an [[mRNA]]'s coding region is where translation into protein begins.<ref name="pmid19056476">{{cite journal |author=Nakamoto T |title=Evolution and the universality of the mechanism of initiation of protein synthesis |journal=Gene |volume=432 |issue=1–2 |pages=1–6 | date=March 2009 |pmid=19056476 |doi=10.1016/j.gene.2008.11.001}}</ref> |
| + | : '''<sup>B</sup>''' {{Note label|stopcodon1|3=none}}{{Note label|stopcodon2|3=none}}{{Note label|stopcodon3|3=none}} The historical basis for designating the stop codons as amber, ochre and opal is described in an autobiography by Sydney Brenner<ref>Brenner S. A Life in Science (2001) Published by Biomed Central Limited ISBN 0-9540278-0-9 see pages 101-104</ref> and in an historical article by Bob Edgar.<ref name="pmid15514035">{{cite journal |vauthors=Edgar B |title=The genome of bacteriophage T4: an archeological dig |journal=Genetics |volume=168 |issue=2 |pages=575–82 |year=2004 |pmid=15514035 |pmc=1448817 |doi= |url=}} see pages 580-581</ref><noinclude> | ||
{{documentation|content=This is the standard or universal [[genetic code]]. | {{documentation|content=This is the standard or universal [[genetic code]]. | ||
Revision as of 17:38, 19 February 2017
| Amino acids biochemical properties | nonpolar | polar | basic | acidic | Termination: stop codon |
| 1st base |
2nd base | 3rd base | |||||||
|---|---|---|---|---|---|---|---|---|---|
| T | C | A | G | ||||||
| T | TTT | (Phe/F) Phenylalanine | TCT | (Ser/S) Serine | TAT | (Tyr/Y) Tyrosine | TGT | (Cys/C) Cysteine | T |
| TTC | TCC | TAC | TGC | C | |||||
| TTA | (Leu/L) Leucine | TCA | TAATemplate:Ref label | Stop (Ochre) | TGATemplate:Ref label | Stop (Opal) | A | ||
| TTG | TCG | TAGTemplate:Ref label | Stop (Amber) | TGG | (Trp/W) Tryptophan | G | |||
| C | CTT | CCT | (Pro/P) Proline | CAT | (His/H) Histidine | CGT | (Arg/R) Arginine | T | |
| CTC | CCC | CAC | CGC | C | |||||
| CTA | CCA | CAA | (Gln/Q) Glutamine | CGA | A | ||||
| CTG | CCG | CAG | CGG | G | |||||
| A | ATT | (Ile/I) Isoleucine | ACT | (Thr/T) Threonine | AAT | (Asn/N) Asparagine | AGT | (Ser/S) Serine | T |
| ATC | ACC | AAC | AGC | C | |||||
| ATA | ACA | AAA | (Lys/K) Lysine | AGA | (Arg/R) Arginine | A | |||
| ATGTemplate:Ref label | (Met/M) Methionine | ACG | AAG | AGG | G | ||||
| G | GTT | (Val/V) Valine | GCT | (Ala/A) Alanine | GAT | (Asp/D) Aspartic acid | GGT | (Gly/G) Glycine | T |
| GTC | GCC | GAC | GGC | C | |||||
| GTA | GCA | GAA | (Glu/E) Glutamic acid | GGA | A | ||||
| GTG | GCG | GAG | GGG | G | |||||
- Template:Note label The codon ATG both codes for methionine and serves as an initiation site: the first ATG in an mRNA's coding region is where translation into protein begins.[1]
- B Template:Note labelTemplate:Note labelTemplate:Note label The historical basis for designating the stop codons as amber, ochre and opal is described in an autobiography by Sydney Brenner[2] and in an historical article by Bob Edgar.[3]
This is the standard or universal genetic code.
This table is found in both DNA Codon Table and Genetic Code (And probably a few other places), so I'm pulling it out so it can be common. By default it's the DNA code (using the letter T for Thymine); use template parameter "T=U" to make it the RNA code (using U for Uracil). See also Template:Inverse codon table.
- ↑ Nakamoto T (March 2009). "Evolution and the universality of the mechanism of initiation of protein synthesis". Gene. 432 (1–2): 1–6. doi:10.1016/j.gene.2008.11.001. PMID 19056476.
- ↑ Brenner S. A Life in Science (2001) Published by Biomed Central Limited ISBN 0-9540278-0-9 see pages 101-104
- ↑ Edgar B (2004). "The genome of bacteriophage T4: an archeological dig". Genetics. 168 (2): 575–82. PMC 1448817. PMID 15514035. see pages 580-581
| Editors can experiment in this template's sandbox (create | mirror) and testcases (create) pages. Subpages of this template. |