Difference between revisions of "Template:Codon table"

From blackwiki
Jump to navigation Jump to search
imported>Manudouz
m (Separate the stop codon from the color chart of amino acids.)
imported>PhiLiP
Line 41: Line 41:
 
|rowspan=6 style="background-color:#ffe75f" | (Leu/L) [[Leucine]]
 
|rowspan=6 style="background-color:#ffe75f" | (Leu/L) [[Leucine]]
 
| {{{T|T}}}CA
 
| {{{T|T}}}CA
| {{{T|T}}}AA
+
| {{{T|T}}}AA{{Ref label|stopcodon1|B|none}}
 
| style="background-color:#B0B0B0;" | [[Stop codon|Stop]] (''Ochre'')
 
| style="background-color:#B0B0B0;" | [[Stop codon|Stop]] (''Ochre'')
| {{{T|T}}}GA
+
| {{{T|T}}}GA{{Ref label|stopcodon2|B|none}}
 
| style="background-color:#B0B0B0;" | [[Stop codon|Stop]] (''Opal'')
 
| style="background-color:#B0B0B0;" | [[Stop codon|Stop]] (''Opal'')
 
! A
 
! A
Line 49: Line 49:
 
| {{{T|T}}}{{{T|T}}}G
 
| {{{T|T}}}{{{T|T}}}G
 
| {{{T|T}}}CG
 
| {{{T|T}}}CG
| {{{T|T}}}AG
+
| {{{T|T}}}AG{{Ref label|stopcodon3|B|none}}
 
| style="background-color:#B0B0B0;" | [[Stop codon|Stop]] (''Amber'')
 
| style="background-color:#B0B0B0;" | [[Stop codon|Stop]] (''Amber'')
 
| {{{T|T}}}GG
 
| {{{T|T}}}GG
Line 150: Line 150:
 
|-
 
|-
 
|}
 
|}
:{{note label|methionine|A|A}} The codon A{{{T|T}}}G both codes for methionine and serves as an initiation site: the first A{{{T|T}}}G in an [[mRNA]]'s coding region is where translation into protein begins.<ref name="pmid19056476">{{cite journal |author=Nakamoto T |title=Evolution and the universality of the mechanism of initiation of protein synthesis |journal=Gene |volume=432 |issue=1–2 |pages=1–6 | date=March 2009 |pmid=19056476 |doi=10.1016/j.gene.2008.11.001}}</ref><noinclude>
+
:{{note label|methionine|A|A}} The codon A{{{T|T}}}G both codes for methionine and serves as an initiation site: the first A{{{T|T}}}G in an [[mRNA]]'s coding region is where translation into protein begins.<ref name="pmid19056476">{{cite journal |author=Nakamoto T |title=Evolution and the universality of the mechanism of initiation of protein synthesis |journal=Gene |volume=432 |issue=1–2 |pages=1–6 | date=March 2009 |pmid=19056476 |doi=10.1016/j.gene.2008.11.001}}</ref>
 +
: '''<sup>B</sup>''' {{Note label|stopcodon1|3=none}}{{Note label|stopcodon2|3=none}}{{Note label|stopcodon3|3=none}} The historical basis for designating the stop codons as amber, ochre and opal is described in an autobiography by Sydney Brenner<ref>Brenner S. A Life in Science (2001) Published by Biomed Central Limited  ISBN 0-9540278-0-9 see pages 101-104</ref> and in an historical article by Bob Edgar.<ref name="pmid15514035">{{cite journal |vauthors=Edgar B |title=The genome of bacteriophage T4: an archeological dig |journal=Genetics |volume=168 |issue=2 |pages=575–82 |year=2004 |pmid=15514035 |pmc=1448817 |doi= |url=}} see pages 580-581</ref><noinclude>
 
{{documentation|content=This is the standard or universal [[genetic code]].
 
{{documentation|content=This is the standard or universal [[genetic code]].
  

Revision as of 17:38, 19 February 2017

Amino acids biochemical properties nonpolar polar basic acidic Termination: stop codon
Standard genetic code
1st
base
2nd base 3rd
base
T C A G
T TTT (Phe/F) Phenylalanine TCT (Ser/S) Serine TAT (Tyr/Y) Tyrosine TGT (Cys/C) Cysteine T
TTC TCC TAC TGC C
TTA (Leu/L) Leucine TCA TAATemplate:Ref label Stop (Ochre) TGATemplate:Ref label Stop (Opal) A
TTG TCG TAGTemplate:Ref label Stop (Amber) TGG (Trp/W) Tryptophan     G
C CTT CCT (Pro/P) Proline CAT (His/H) Histidine CGT (Arg/R) Arginine T
CTC CCC CAC CGC C
CTA CCA CAA (Gln/Q) Glutamine CGA A
CTG CCG CAG CGG G
A ATT (Ile/I) Isoleucine ACT (Thr/T) Threonine         AAT (Asn/N) Asparagine AGT (Ser/S) Serine T
ATC ACC AAC AGC C
ATA ACA AAA (Lys/K) Lysine AGA (Arg/R) Arginine A
ATGTemplate:Ref label (Met/M) Methionine ACG AAG AGG G
G GTT (Val/V) Valine GCT (Ala/A) Alanine GAT (Asp/D) Aspartic acid GGT (Gly/G) Glycine T
GTC GCC GAC GGC C
GTA GCA GAA (Glu/E) Glutamic acid GGA A
GTG GCG GAG GGG G
Template:Note label The codon ATG both codes for methionine and serves as an initiation site: the first ATG in an mRNA's coding region is where translation into protein begins.[1]
B Template:Note labelTemplate:Note labelTemplate:Note label The historical basis for designating the stop codons as amber, ochre and opal is described in an autobiography by Sydney Brenner[2] and in an historical article by Bob Edgar.[3]
Template documentation

This is the standard or universal genetic code.

This table is found in both DNA Codon Table and Genetic Code (And probably a few other places), so I'm pulling it out so it can be common. By default it's the DNA code (using the letter T for Thymine); use template parameter "T=U" to make it the RNA code (using U for Uracil). See also Template:Inverse codon table.

  1. Nakamoto T (March 2009). "Evolution and the universality of the mechanism of initiation of protein synthesis". Gene. 432 (1–2): 1–6. doi:10.1016/j.gene.2008.11.001. PMID 19056476.
  2. Brenner S. A Life in Science (2001) Published by Biomed Central Limited ISBN 0-9540278-0-9 see pages 101-104
  3. Edgar B (2004). "The genome of bacteriophage T4: an archeological dig". Genetics. 168 (2): 575–82. PMC 1448817. PMID 15514035. see pages 580-581