Difference between revisions of "Template:Codon table"

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:{{note label|start|A|A}} The codon A{{{T|T}}}G both codes for methionine and serves as an initiation site: the first A{{{T|T}}}G in an [[mRNA]]'s coding region is where translation into protein begins.<ref name="pmid19056476">{{cite journal |author=Nakamoto T |title=Evolution and the universality of the mechanism of initiation of protein synthesis |journal=Gene |volume=432 |issue=1–2 |pages=1–6 | date=March 2009 |pmid=19056476 |doi=10.1016/j.gene.2008.11.001}}</ref> The other start codons listed by GenBank are rare in eukaryotes and generally codes for Met/fMet.<ref>{{Cite journal| last7 = Collado-Vides | first9 = C. K. | first8 = J. D. | first7 = J.| last10 = Mayhew| title = The Complete Genome Sequence of Escherichia coli K-12 | first17 = Y.| last17 = Shao | first16 = B.| last16 = Mau | first15 = D. J.| last15 = Rose | first14 = M. A.| last14 = Goeden | first13 = H. A.| last13 = Kirkpatrick | first12 = N. W.| last12 = Davis | first11 = J.| journal = Science| last11 = Gregor| doi = 10.1126/science.277.5331.1453 | first10 = G. F.| pmid = 9278503| year = 1997| pages = 1453–1462| volume = 277| issue = 5331 | first6 = M. | first2 = G.| last9 = Rode | first3 = C. A.| last2 = Plunkett g| last4 = Perna | first1 = F. R.| last6 = Riley| last5 = Burland| last1 = Blattner| last8 = Glasner | first5 = V. | first4 = N. T.| last3 = Bloch }}</ref>
 
:{{note label|start|A|A}} The codon A{{{T|T}}}G both codes for methionine and serves as an initiation site: the first A{{{T|T}}}G in an [[mRNA]]'s coding region is where translation into protein begins.<ref name="pmid19056476">{{cite journal |author=Nakamoto T |title=Evolution and the universality of the mechanism of initiation of protein synthesis |journal=Gene |volume=432 |issue=1–2 |pages=1–6 | date=March 2009 |pmid=19056476 |doi=10.1016/j.gene.2008.11.001}}</ref> The other start codons listed by GenBank are rare in eukaryotes and generally codes for Met/fMet.<ref>{{Cite journal| last7 = Collado-Vides | first9 = C. K. | first8 = J. D. | first7 = J.| last10 = Mayhew| title = The Complete Genome Sequence of Escherichia coli K-12 | first17 = Y.| last17 = Shao | first16 = B.| last16 = Mau | first15 = D. J.| last15 = Rose | first14 = M. A.| last14 = Goeden | first13 = H. A.| last13 = Kirkpatrick | first12 = N. W.| last12 = Davis | first11 = J.| journal = Science| last11 = Gregor| doi = 10.1126/science.277.5331.1453 | first10 = G. F.| pmid = 9278503| year = 1997| pages = 1453–1462| volume = 277| issue = 5331 | first6 = M. | first2 = G.| last9 = Rode | first3 = C. A.| last2 = Plunkett g| last4 = Perna | first1 = F. R.| last6 = Riley| last5 = Burland| last1 = Blattner| last8 = Glasner | first5 = V. | first4 = N. T.| last3 = Bloch }}</ref>
: '''<sup>B</sup>''' {{Note label|stopcodon1|3=none}}{{Note label|stopcodon2|3=none}}{{Note label|stopcodon3|3=none}} The historical basis for designating the stop codons as amber, ochre and opal is described in an autobiography by Sydney Brenner<ref>Brenner S. A Life in Science (2001) Published by Biomed Central Limited  {{ISBN|0-9540278-0-9}} see pages 101-104</ref> and in a historical article by Bob Edgar.<ref name="pmid15514035">{{cite journal |vauthors=Edgar B |title=The genome of bacteriophage T4: an archeological dig |journal=Genetics |volume=168 |issue=2 |pages=575–82 |year=2004 |pmid=15514035 |pmc=1448817 |doi= |url=}} see pages 580-581</ref><noinclude>
+
: '''<sup>B</sup>''' {{Note label|stopcodon1|3=none}}{{Note label|stopcodon2|3=none}}{{Note label|stopcodon3|3=none}} The historical basis for designating the [[stop codon#Nomenclature|stop codons as amber, ochre and opal]] is described in an autobiography by Sydney Brenner<ref>Brenner S. A Life in Science (2001) Published by Biomed Central Limited  {{ISBN|0-9540278-0-9}} see pages 101-104</ref> and in a historical article by Bob Edgar.<ref name="pmid15514035">{{cite journal |vauthors=Edgar B |title=The genome of bacteriophage T4: an archeological dig |journal=Genetics |volume=168 |issue=2 |pages=575–82 |year=2004 |pmid=15514035 |pmc=1448817 |doi= |url=}} see pages 580-581</ref><noinclude>
 
{{documentation|content=This is the standard or universal [[genetic code]].
 
{{documentation|content=This is the standard or universal [[genetic code]].
  

Revision as of 21:10, 22 April 2020

Amino-acid biochemical properties Nonpolar Polar Basic Acidic Termination: stop codon
Standard genetic code
1st
base
2nd base 3rd
base
T C A G
T TTT (Phe/F) Phenylalanine TCT (Ser/S) Serine TAT (Tyr/Y) Tyrosine TGT (Cys/C) Cysteine T
TTC TCC TAC TGC C
TTA (Leu/L) Leucine TCA TAA Stop (Ochre)Template:Ref label TGA Stop (Opal)Template:Ref label A
TTGTemplate:Ref label TCG TAG Stop (Amber)Template:Ref label TGG (Trp/W) Tryptophan     G
C CTT CCT (Pro/P) Proline CAT (His/H) Histidine CGT (Arg/R) Arginine T
CTC CCC CAC CGC C
CTA CCA CAA (Gln/Q) Glutamine CGA A
CTGTemplate:Ref label CCG CAG CGG G
A ATT (Ile/I) Isoleucine ACT (Thr/T) Threonine         AAT (Asn/N) Asparagine AGT (Ser/S) Serine T
ATC ACC AAC AGC C
ATA ACA AAA (Lys/K) Lysine AGA (Arg/R) Arginine A
ATGTemplate:Ref label (Met/M) Methionine ACG AAG AGG G
G GTT (Val/V) Valine GCT (Ala/A) Alanine GAT (Asp/D) Aspartic acid GGT (Gly/G) Glycine T
GTC GCC GAC GGC C
GTA GCA GAA (Glu/E) Glutamic acid GGA A
GTG GCG GAG GGG G
Template:Note label The codon ATG both codes for methionine and serves as an initiation site: the first ATG in an mRNA's coding region is where translation into protein begins.[1] The other start codons listed by GenBank are rare in eukaryotes and generally codes for Met/fMet.[2]
B Template:Note labelTemplate:Note labelTemplate:Note label The historical basis for designating the stop codons as amber, ochre and opal is described in an autobiography by Sydney Brenner[3] and in a historical article by Bob Edgar.[4]
Template documentation

This is the standard or universal genetic code.

This table is found in both DNA Codon Table and Genetic Code (And probably a few other places), so I'm pulling it out so it can be common. By default it's the DNA code (using the letter T for Thymine); use template parameter "T=U" to make it the RNA code (using U for Uracil). See also Template:Inverse codon table.

  1. Nakamoto T (March 2009). "Evolution and the universality of the mechanism of initiation of protein synthesis". Gene. 432 (1–2): 1–6. doi:10.1016/j.gene.2008.11.001. PMID 19056476.
  2. Blattner, F. R.; Plunkett g, G.; Bloch, C. A.; Perna, N. T.; Burland, V.; Riley, M.; Collado-Vides, J.; Glasner, J. D.; Rode, C. K.; Mayhew, G. F.; Gregor, J.; Davis, N. W.; Kirkpatrick, H. A.; Goeden, M. A.; Rose, D. J.; Mau, B.; Shao, Y. (1997). "The Complete Genome Sequence of Escherichia coli K-12". Science. 277 (5331): 1453–1462. doi:10.1126/science.277.5331.1453. PMID 9278503.
  3. Brenner S. A Life in Science (2001) Published by Biomed Central Limited ISBN 0-9540278-0-9 see pages 101-104
  4. Edgar B (2004). "The genome of bacteriophage T4: an archeological dig". Genetics. 168 (2): 575–82. PMC 1448817. PMID 15514035. see pages 580-581