Difference between revisions of "Template:FluoropyrimidineActivity WP1601"

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imported>AlexanderPico
imported>KristinaHanspers
(New version)
Line 1: Line 1:
 
<noinclude>
 
<noinclude>
<!--
+
{{Documentation|Template:Interactive_pathway_maps/doc}}</noinclude>{{{header|''Click on genes, proteins and metabolites below to link to respective articles.'' <ref name="WikiPathways">The interactive pathway map can be edited at WikiPathways: {{cite web | url = http://www.wikipathways.org/index.php/Pathway:WP1601 | title = Fluoropyrimidine_Activity_WP1601 | author =  | date = | work = | publisher = | pages = | accessdate = }}</ref> }}}
Checklist:
 
1. Locate appropriate pathway article and update imagemap default link accordingly. Also consider modifying the "Description" at the very bottom of the template to provide a more descriptive pathway name.
 
2. Check pathway for "search for" links when hovering and attempt to locate an appropriate wikipedia article. Update imagemap link, link color, and highlight references accordingly.
 
3. Check pathway for external links in green and attempt to locate appropriate wikipedia content instead. Update imagemap link, link color, and highlight references accordingly.
 
4. Delete this checklist from the template :)
 
-->
 
{{Documentation|Template:Interactive_pathway_maps/doc}}</noinclude>{{{header|''Click on genes, proteins and metabolites below to link to respective Wikipedia articles.'' <ref name="WikiPathways">The interactive pathway map can be edited at WikiPathways: {{cite web | url = http://www.wikipathways.org/index.php/Pathway:WP1601 | title = FluoropyrimidineActivity_WP1601 | author =  | date = | work = | publisher = | pages = | accessdate = }}</ref> }}}
 
  
 
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|Image={{Annotated image |float=none|image-width=699|annot-color=white|imagemap=<imagemap>
Image:FluoropyrimidineActivity_WP1601.png|right|alt=FluoropyrimidineActivity_WP1601
+
Image:FluoropyrimidineActivity_WP1601.png|right|alt=Fluoropyrimidine_Activity_WP1601
 
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Line 22: Line 15:
 
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rect 311.0 325.0 357.0 345.0 [http://en.wikipedia.org/wiki/Special:Search?ns0=1&search=%22EntrezGene+%3D+151531%22&fulltext=Search search for article]
 
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rect 188.0 308.0 232.0 328.0 [http://en.wikipedia.org/wiki/Amidophosphoribosyltransferase go to article]
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rect 326.5 561.0 370.5 581.0 [http://en.wikipedia.org/wiki/ABCC3 go to article]
Line 43: Line 36:
 
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rect 79.0 861.0 242.0 881.0 [http://www.hmdb.ca/metabolites/HMDB01354 Go to HMDB]
 
rect 79.0 861.0 242.0 881.0 [http://www.hmdb.ca/metabolites/HMDB01354 Go to HMDB]
rect 164.0 907.0 241.0 927.0 [http://en.wikipedia.org/wiki/Dihydrofolate Go to article]
+
rect 164.0 907.0 241.0 927.0 [http://www.hmdb.ca/metabolites/HMDB01056 Go to HMDB]
 +
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 +
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Line 53: Line 48:
 
rect 180.5 941.0 224.5 961.0 [http://en.wikipedia.org/wiki/Methylenetetrahydrofolate_reductase go to article]
 
rect 180.5 941.0 224.5 961.0 [http://en.wikipedia.org/wiki/Methylenetetrahydrofolate_reductase go to article]
 
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rect 224.5 941.0 268.5 961.0 [http://en.wikipedia.org/wiki/GGH_(gene) go to article]
default [[Fluorouracil#Interactive_pathway_map|Go to pathway article]]
+
default [[#Interactive_pathway_map|Go to pathway article]]
 
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Line 79: Line 74:
 
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|UPP2=
+
|151531=
 
{{Annotation|0|0|[[<div style="display:block; width:39px; height:12px;
 
{{Annotation|0|0|[[<div style="display:block; width:39px; height:12px;
 
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|UCK1=
+
|83549=
 
{{Annotation|0|0|[[<div style="display:block; width:37px; height:12px;
 
{{Annotation|0|0|[[<div style="display:block; width:37px; height:12px;
 
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Line 157: Line 154:
 
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|UPP2__alt1=
+
|151531__alt1=
 
{{Annotation|0|0|[[<div style="display:block; width:39px; height:12px;
 
{{Annotation|0|0|[[<div style="display:block; width:39px; height:12px;
 
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Line 169: Line 166:
 
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|Amidophosphoribosyltransferase=
+
|PPAT=
 
{{Annotation|0|0|[[<div style="display:block; width:37px; height:12px;
 
{{Annotation|0|0|[[<div style="display:block; width:37px; height:12px;
 
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Line 213: Line 210:
 
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overflow:hidden; position:relative; left:79.0px; top:849px;
 
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|Dihydrofolate=
+
|HMDB01056=
 
{{Annotation|0|0|[[<div style="display:block; width:70px; height:12px;
 
{{Annotation|0|0|[[<div style="display:block; width:70px; height:12px;
 
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overflow:hidden; position:relative; left:164.0px; top:895px;
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 +
|Apoptosis=
 +
{{Annotation|0|0|[[<div style="display:block; width:73px; height:12px;
 +
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 +
|DNA_repair=
 +
{{Annotation|0|0|[[<div style="display:block; width:73px; height:12px;
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|P53=
 
|P53=
Line 266: Line 271:
 
|CDA_(gene)=375
 
|CDA_(gene)=375
 
|UPP1=375
 
|UPP1=375
|UPP2=375
+
|151531=375
 
|ECGF1=375
 
|ECGF1=375
 
|DPYD=375
 
|DPYD=375
 
|DPYS=375
 
|DPYS=375
 
|UPB1=375
 
|UPB1=375
|UCK1=375
+
|83549=375
 
|UPP1__alt1=375
 
|UPP1__alt1=375
|UPP2__alt1=375
+
|151531__alt1=375
 
|UCK2=375
 
|UCK2=375
 
|Uridine_monophosphate_synthetase=375
 
|Uridine_monophosphate_synthetase=375
|Amidophosphoribosyltransferase=375
+
|PPAT=375
 
|Thymidine_kinase_1=375
 
|Thymidine_kinase_1=375
 
|ECGF1__alt1=375
 
|ECGF1__alt1=375
Line 287: Line 292:
 
|Equilibrative_nucleoside_transporter_1=375
 
|Equilibrative_nucleoside_transporter_1=375
 
|HMDB01354=375
 
|HMDB01354=375
|Dihydrofolate=375
+
|HMDB01056=375
 +
|Apoptosis=375
 +
|DNA_repair=375
 
|P53=375
 
|P53=375
 
|ERCC2=375
 
|ERCC2=375
Line 297: Line 304:
 
|Methylenetetrahydrofolate_reductase=375
 
|Methylenetetrahydrofolate_reductase=375
 
|GGH_(gene)=375
 
|GGH_(gene)=375
|#default=735
+
|#default=699
 
}}
 
}}
 
|cHeight={{#switch:{{{highlight}}}
 
|cHeight={{#switch:{{{highlight}}}
Line 308: Line 315:
 
|CDA_(gene)=350
 
|CDA_(gene)=350
 
|UPP1=350
 
|UPP1=350
|UPP2=350
+
|151531=350
 
|ECGF1=350
 
|ECGF1=350
 
|DPYD=350
 
|DPYD=350
 
|DPYS=350
 
|DPYS=350
 
|UPB1=350
 
|UPB1=350
|UCK1=350
+
|83549=350
 
|UPP1__alt1=350
 
|UPP1__alt1=350
|UPP2__alt1=350
+
|151531__alt1=350
 
|UCK2=350
 
|UCK2=350
 
|Uridine_monophosphate_synthetase=350
 
|Uridine_monophosphate_synthetase=350
|Amidophosphoribosyltransferase=350
+
|PPAT=350
 
|Thymidine_kinase_1=350
 
|Thymidine_kinase_1=350
 
|ECGF1__alt1=350
 
|ECGF1__alt1=350
Line 329: Line 336:
 
|Equilibrative_nucleoside_transporter_1=350
 
|Equilibrative_nucleoside_transporter_1=350
 
|HMDB01354=350
 
|HMDB01354=350
|Dihydrofolate=350
+
|HMDB01056=350
 +
|Apoptosis=350
 +
|DNA_repair=350
 
|P53=350
 
|P53=350
 
|ERCC2=350
 
|ERCC2=350
Line 339: Line 348:
 
|Methylenetetrahydrofolate_reductase=350
 
|Methylenetetrahydrofolate_reductase=350
 
|GGH_(gene)=350
 
|GGH_(gene)=350
|#default=1100
+
|#default=1022
 
}}
 
}}
 
|oTop={{#switch:{{{highlight}}}
 
|oTop={{#switch:{{{highlight}}}
Line 350: Line 359:
 
|CDA_(gene)=25
 
|CDA_(gene)=25
 
|UPP1=25
 
|UPP1=25
|UPP2=25
+
|151531=25
 
|ECGF1=25
 
|ECGF1=25
 
|DPYD=93
 
|DPYD=93
 
|DPYS=157
 
|DPYS=157
 
|UPB1=156
 
|UPB1=156
|UCK1=255
+
|83549=255
 
|UPP1__alt1=165
 
|UPP1__alt1=165
|UPP2__alt1=185
+
|151531__alt1=185
 
|UCK2=275
 
|UCK2=275
 
|Uridine_monophosphate_synthetase=148
 
|Uridine_monophosphate_synthetase=148
|Amidophosphoribosyltransferase=168
+
|PPAT=168
 
|Thymidine_kinase_1=181
 
|Thymidine_kinase_1=181
 
|ECGF1__alt1=114
 
|ECGF1__alt1=114
Line 370: Line 379:
 
|ABCC5=401
 
|ABCC5=401
 
|Equilibrative_nucleoside_transporter_1=400
 
|Equilibrative_nucleoside_transporter_1=400
|HMDB01354=721
+
|HMDB01354=697
|Dihydrofolate=767
+
|HMDB01056=697
 +
|Apoptosis=671
 +
|DNA_repair=697
 
|P53=697
 
|P53=697
|ERCC2=745
+
|ERCC2=697
|Thymine-DNA_glycosylase=745
+
|Thymine-DNA_glycosylase=697
|XRCC3=765
+
|XRCC3=697
|SMUG1=765
+
|SMUG1=697
|Dihydrofolate_reductase=775
+
|Dihydrofolate_reductase=697
|FPGS=775
+
|FPGS=697
|Methylenetetrahydrofolate_reductase=775
+
|Methylenetetrahydrofolate_reductase=697
|GGH_(gene)=775
+
|GGH_(gene)=697
 
|#default=25
 
|#default=25
 
}}
 
}}
Line 392: Line 403:
 
|CDA_(gene)=242.5
 
|CDA_(gene)=242.5
 
|UPP1=189.5
 
|UPP1=189.5
|UPP2=189.5
+
|151531=189.5
 
|ECGF1=189.5
 
|ECGF1=189.5
 
|DPYD=194.5
 
|DPYD=194.5
 
|DPYS=284.5
 
|DPYS=284.5
|UPB1=370
+
|UPB1=334
|UCK1=165.5
+
|83549=165.5
 
|UPP1__alt1=156.5
 
|UPP1__alt1=156.5
|UPP2__alt1=156.5
+
|151531__alt1=156.5
 
|UCK2=165.5
 
|UCK2=165.5
 
|Uridine_monophosphate_synthetase=32.5
 
|Uridine_monophosphate_synthetase=32.5
|Amidophosphoribosyltransferase=32.5
+
|PPAT=32.5
 
|Thymidine_kinase_1=10
 
|Thymidine_kinase_1=10
 
|ECGF1__alt1=10
 
|ECGF1__alt1=10
Line 411: Line 422:
 
|ABCC4__alt1=171
 
|ABCC4__alt1=171
 
|ABCC5=171
 
|ABCC5=171
|Equilibrative_nucleoside_transporter_1=341.5
+
|Equilibrative_nucleoside_transporter_1=334
 
|HMDB01354=10
 
|HMDB01354=10
|Dihydrofolate=25
+
|HMDB01056=25
 +
|Apoptosis=299.5
 +
|DNA_repair=251.5
 
|P53=332
 
|P53=332
 
|ERCC2=231
 
|ERCC2=231

Revision as of 19:23, 17 January 2012

Template documentation[view] [edit] [history] [purge]

This template is the product of a custom export process of WikiPathways content as interactive pathway maps for Wikipedia articles. Please do not edit these templates directly as they include calculated hyperlinks and annotations based on original content curated at WikiPathways. Please feel free to edit and update the pathway content at WikiPathways. Your changes will be reflected here when the template is regenerated.

The collaborative design of this template, which is actually a set of nested templates with an image map at the core, was initially proposed and refined in collaboration with Gene Wiki and MCB. Please review the background of this discussion before making edits. Feel free to make suggestions in the associated talk pages.

The process of generating the content using this template involves a combination of scripts and manual steps detailed at https://github.com/wikipathways/Wikipedia-template. Feel free to contact WikiPathways if you need assistance updating or creating content using this template.

Features

  • Gene links – click on blue-underlined gene boxes in pathway to go to the corresponding Gene Wiki article
  • Metabolite links – click on blue-underlined metabolite boxes in pathway to go to the corresponding metabolite article
  • Start new pages – click on red-underlined boxes to start a new Wikipedia article where one currently does not exist
  • Bold self links – the gene or metabolite focused on in the current article is displayed as a bold-bordered self link
  • Pathway links – click anywhere in the background on the pathway to go to the corresponding pathway article with an expanded view of the interactive pathway map
  • Variable-controlled cropped view – pathway maps can be cropped by referencing a gene or metabolite (see Usages #2 and #3 below).
  • Variable-controlled scroll view – pathway maps can be viewed in a scrollable window at a particular width and height (see Usage #4 below).

Usage

This template is commonly transcluded into the following types of articles in the following ways:

Pathway articles
Where you want to see the full pathway
{{TCACycle WP78}}
Gene Wiki articles
Where you want to crop the pathway view to center on a particular gene
{{TCACycle WP78|highlight=Dihydrolipoyl_transacetylase}}
Metabolite articles
Where you want to crop the pathway view to center on a particular metabolite
{{TCACycle WP78|highlight=Fumaric_acid}}
Miscellaneous
Where you override default views and specify the width and height of a scrollable window in which to view the entire pathway
{{TCACycle WP78|width=600|height=300}}
  • width: the width of the scrollable window
  • height: the height of the scrollable window
PLEASE DO NOT
Please do not transclude below the References section or into other templates commonly transcluded below the Reference section. This produces a red warning (missing refs tag) due to the use of in-line references. Thank you!

Examples

Known issues

  • When there is more than one copy of a gene or metabolite on a pathway, clicking on any copy will lead to the same page (as expected) and to the same highlighted and centered view (which may or may not be the particular copy you clicked on). This is because the highlighting and centering are determined by the variable passed in to the template and not by what exactly you click on. So, when using this template on a gene or metabolite article, take note of which copy (if there is more than one) is being highlighted in the view. The template knows about the other copies and you can choose which is the best representative copy to highlight by passing in the right variable. The first copy is given the name of the article (e.g., Apple_acid); additional copies are named "alt1", "alt2", etc. (e.g., Apple_acid__alt1). Note the two underscore characters between the name and the "alt" designation. In this way you can preview and decide which copy you want to highlight on a given gene or metabolite article.
  • We do not have a public way of exporting pathways yet.

Click on genes, proteins and metabolites below to link to respective articles. [1]

Template:Preview Crop

  1. The interactive pathway map can be edited at WikiPathways: "Fluoropyrimidine_Activity_WP1601".