Difference between revisions of "Template:FluoropyrimidineActivity WP1601"
imported>KristinaHanspers |
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| Line 10: | Line 10: | ||
rect 308.0 82.0 361.0 102.0 [http://en.wikipedia.org/wiki/ABCG2 go to article] | rect 308.0 82.0 361.0 102.0 [http://en.wikipedia.org/wiki/ABCG2 go to article] | ||
rect 308.0 62.0 361.0 82.0 [http://en.wikipedia.org/wiki/ABCC4 go to article] | rect 308.0 62.0 361.0 82.0 [http://en.wikipedia.org/wiki/ABCC4 go to article] | ||
| − | rect 224.0 25.0 328.0 45.0 [[#Interactive_pathway_map| | + | rect 224.0 25.0 328.0 45.0 [[#Interactive_pathway_map|go to pathway article]] |
| − | rect 238.0 207.0 289.0 227.0 [[#Interactive_pathway_map| | + | rect 238.0 207.0 289.0 227.0 [[#Interactive_pathway_map|go to pathway article]] |
rect 72.0 115.0 123.0 135.0 [http://en.wikipedia.org/wiki/Tegafur go to article] | rect 72.0 115.0 123.0 135.0 [http://en.wikipedia.org/wiki/Tegafur go to article] | ||
rect 54.0 173.0 113.0 193.0 [http://en.wikipedia.org/wiki/CYP2A6 go to article] | rect 54.0 173.0 113.0 193.0 [http://en.wikipedia.org/wiki/CYP2A6 go to article] | ||
| Line 19: | Line 19: | ||
rect 403.0 150.0 437.0 170.0 [http://en.wikipedia.org/wiki/Cytidine_deaminase go to article] | rect 403.0 150.0 437.0 170.0 [http://en.wikipedia.org/wiki/Cytidine_deaminase go to article] | ||
rect 344.0 125.0 390.0 145.0 [http://en.wikipedia.org/wiki/UPP1 go to article] | rect 344.0 125.0 390.0 145.0 [http://en.wikipedia.org/wiki/UPP1 go to article] | ||
| − | rect 344.0 145.0 390.0 165.0 [http:// | + | rect 344.0 145.0 390.0 165.0 [http://en.wikipedia.org/wiki/Uridine_phosphorylase go to article] |
rect 344.0 165.0 390.0 185.0 [http://en.wikipedia.org/wiki/ECGF1 go to article] | rect 344.0 165.0 390.0 185.0 [http://en.wikipedia.org/wiki/ECGF1 go to article] | ||
| − | rect 245.0 347.0 284.0 367.0 [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=150856 | + | rect 245.0 347.0 284.0 367.0 [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=150856 go to PubChem Compound] |
rect 350.0 233.0 394.0 253.0 [http://en.wikipedia.org/wiki/DPYD go to article] | rect 350.0 233.0 394.0 253.0 [http://en.wikipedia.org/wiki/DPYD go to article] | ||
rect 440.0 297.0 484.0 317.0 [http://en.wikipedia.org/wiki/DPYS go to article] | rect 440.0 297.0 484.0 317.0 [http://en.wikipedia.org/wiki/DPYS go to article] | ||
rect 544.0 296.0 588.0 316.0 [http://en.wikipedia.org/wiki/UPB1 go to article] | rect 544.0 296.0 588.0 316.0 [http://en.wikipedia.org/wiki/UPB1 go to article] | ||
| − | rect 321.0 395.0 365.0 415.0 [http:// | + | rect 321.0 395.0 365.0 415.0 [http://en.wikipedia.org/wiki/Uridine_kinase go to article] |
rect 311.0 305.0 357.0 325.0 [http://en.wikipedia.org/wiki/UPP1 go to article] | rect 311.0 305.0 357.0 325.0 [http://en.wikipedia.org/wiki/UPP1 go to article] | ||
| − | rect 311.0 325.0 357.0 345.0 [http:// | + | rect 311.0 325.0 357.0 345.0 [http://en.wikipedia.org/wiki/Uridine_phosphorylase go to article] |
rect 321.0 415.0 365.0 435.0 [http://en.wikipedia.org/wiki/UCK2 go to article] | rect 321.0 415.0 365.0 435.0 [http://en.wikipedia.org/wiki/UCK2 go to article] | ||
rect 188.0 288.0 232.0 308.0 [http://en.wikipedia.org/wiki/Uridine_monophosphate_synthetase go to article] | rect 188.0 288.0 232.0 308.0 [http://en.wikipedia.org/wiki/Uridine_monophosphate_synthetase go to article] | ||
| Line 40: | Line 40: | ||
rect 326.5 541.0 370.5 561.0 [http://en.wikipedia.org/wiki/ABCC5 go to article] | rect 326.5 541.0 370.5 561.0 [http://en.wikipedia.org/wiki/ABCC5 go to article] | ||
rect 491.0 540.0 547.0 560.0 [http://en.wikipedia.org/wiki/Equilibrative_nucleoside_transporter_1 go to article] | rect 491.0 540.0 547.0 560.0 [http://en.wikipedia.org/wiki/Equilibrative_nucleoside_transporter_1 go to article] | ||
| − | rect 414.0 475.0 453.0 495.0 [[#Interactive_pathway_map| | + | rect 414.0 475.0 453.0 495.0 [[#Interactive_pathway_map|go to pathway article]] |
| − | rect 418.0 610.0 457.0 630.0 [[#Interactive_pathway_map| | + | rect 418.0 610.0 457.0 630.0 [[#Interactive_pathway_map|go to pathway article]] |
| − | rect 79.0 861.0 242.0 881.0 [http://www.hmdb.ca/metabolites/HMDB01354 | + | rect 79.0 861.0 242.0 881.0 [http://www.hmdb.ca/metabolites/HMDB01354 go to HMDB] |
| − | rect 164.0 907.0 241.0 927.0 [http://www.hmdb.ca/metabolites/HMDB01056 | + | rect 164.0 907.0 241.0 927.0 [http://www.hmdb.ca/metabolites/HMDB01056 go to HMDB] |
| − | rect 288.0 849.0 332.0 869.0 [http://www.hmdb.ca/metabolites/HMDB01056 | + | rect 288.0 849.0 332.0 869.0 [http://www.hmdb.ca/metabolites/HMDB01056 go to HMDB] |
| − | rect 308.0 887.0 352.0 907.0 [http://www.hmdb.ca/metabolites/HMDB01056 | + | rect 308.0 887.0 352.0 907.0 [http://www.hmdb.ca/metabolites/HMDB01056 go to HMDB] |
| − | rect 437.0 811.0 517.0 831.0 [http:// | + | rect 437.0 811.0 517.0 831.0 [http://en.wikipedia.org/wiki/Apoptosis go to article] |
| − | rect 389.0 858.0 469.0 878.0 [http:// | + | rect 389.0 858.0 469.0 878.0 [http://en.wikipedia.org/wiki/DNA_repair go to WikiPathways] |
rect 487.5 837.0 531.5 857.0 [http://en.wikipedia.org/wiki/P53 go to article] | rect 487.5 837.0 531.5 857.0 [http://en.wikipedia.org/wiki/P53 go to article] | ||
rect 386.5 885.0 430.5 905.0 [http://en.wikipedia.org/wiki/ERCC2 go to article] | rect 386.5 885.0 430.5 905.0 [http://en.wikipedia.org/wiki/ERCC2 go to article] | ||
| Line 96: | Line 96: | ||
{{Annotation|0|0|[[<div style="display:block; width:44px; height:0px; overflow:hidden; position:relative; left:288.0px; top:854px; background:transparent; border-top:3px green solid"></div>]]}} | {{Annotation|0|0|[[<div style="display:block; width:44px; height:0px; overflow:hidden; position:relative; left:288.0px; top:854px; background:transparent; border-top:3px green solid"></div>]]}} | ||
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| − | {{Annotation|0|0|[[<div style="display:block; width:80px; height:0px; overflow:hidden; position:relative; left:437.0px; top:816px; background:transparent; border-top:3px | + | {{Annotation|0|0|[[<div style="display:block; width:80px; height:0px; overflow:hidden; position:relative; left:437.0px; top:816px; background:transparent; border-top:3px blue solid"></div>]]}} |
{{Annotation|0|0|[[<div style="display:block; width:80px; height:0px; overflow:hidden; position:relative; left:389.0px; top:863px; background:transparent; border-top:3px green solid"></div>]]}} | {{Annotation|0|0|[[<div style="display:block; width:80px; height:0px; overflow:hidden; position:relative; left:389.0px; top:863px; background:transparent; border-top:3px green solid"></div>]]}} | ||
{{Annotation|0|0|[[<div style="display:block; width:44px; height:0px; overflow:hidden; position:relative; left:487.5px; top:842px; background:transparent; border-top:3px blue solid"></div>]]}} | {{Annotation|0|0|[[<div style="display:block; width:44px; height:0px; overflow:hidden; position:relative; left:487.5px; top:842px; background:transparent; border-top:3px blue solid"></div>]]}} | ||
| Line 156: | Line 156: | ||
overflow:hidden; position:relative; left:344.0px; top:113px; | overflow:hidden; position:relative; left:344.0px; top:113px; | ||
background:transparent; border:4px black solid"></div>]]}} | background:transparent; border:4px black solid"></div>]]}} | ||
| − | | | + | |Uridine_phosphorylase= |
{{Annotation|0|0|[[<div style="display:block; width:39px; height:12px; | {{Annotation|0|0|[[<div style="display:block; width:39px; height:12px; | ||
overflow:hidden; position:relative; left:344.0px; top:133px; | overflow:hidden; position:relative; left:344.0px; top:133px; | ||
| Line 180: | Line 180: | ||
overflow:hidden; position:relative; left:544.0px; top:284px; | overflow:hidden; position:relative; left:544.0px; top:284px; | ||
background:transparent; border:4px black solid"></div>]]}} | background:transparent; border:4px black solid"></div>]]}} | ||
| − | | | + | |Uridine_kinase= |
{{Annotation|0|0|[[<div style="display:block; width:37px; height:12px; | {{Annotation|0|0|[[<div style="display:block; width:37px; height:12px; | ||
overflow:hidden; position:relative; left:321.0px; top:383px; | overflow:hidden; position:relative; left:321.0px; top:383px; | ||
| Line 188: | Line 188: | ||
overflow:hidden; position:relative; left:311.0px; top:293px; | overflow:hidden; position:relative; left:311.0px; top:293px; | ||
background:transparent; border:4px black solid"></div>]]}} | background:transparent; border:4px black solid"></div>]]}} | ||
| − | | | + | |Uridine_phosphorylase__alt1= |
{{Annotation|0|0|[[<div style="display:block; width:39px; height:12px; | {{Annotation|0|0|[[<div style="display:block; width:39px; height:12px; | ||
overflow:hidden; position:relative; left:311.0px; top:313px; | overflow:hidden; position:relative; left:311.0px; top:313px; | ||
| Line 264: | Line 264: | ||
overflow:hidden; position:relative; left:308.0px; top:875px; | overflow:hidden; position:relative; left:308.0px; top:875px; | ||
background:transparent; border:4px black solid"></div>]]}} | background:transparent; border:4px black solid"></div>]]}} | ||
| − | | | + | |Apoptosis= |
{{Annotation|0|0|[[<div style="display:block; width:73px; height:12px; | {{Annotation|0|0|[[<div style="display:block; width:73px; height:12px; | ||
overflow:hidden; position:relative; left:437.0px; top:799px; | overflow:hidden; position:relative; left:437.0px; top:799px; | ||
background:transparent; border:4px black solid"></div>]]}} | background:transparent; border:4px black solid"></div>]]}} | ||
| − | | | + | |DNA_repair= |
{{Annotation|0|0|[[<div style="display:block; width:73px; height:12px; | {{Annotation|0|0|[[<div style="display:block; width:73px; height:12px; | ||
overflow:hidden; position:relative; left:389.0px; top:846px; | overflow:hidden; position:relative; left:389.0px; top:846px; | ||
| Line 325: | Line 325: | ||
|Cytidine_deaminase=375 | |Cytidine_deaminase=375 | ||
|UPP1=375 | |UPP1=375 | ||
| − | | | + | |Uridine_phosphorylase=375 |
|ECGF1=375 | |ECGF1=375 | ||
|150856=375 | |150856=375 | ||
| Line 331: | Line 331: | ||
|DPYS=375 | |DPYS=375 | ||
|UPB1=375 | |UPB1=375 | ||
| − | | | + | |Uridine_kinase=375 |
|UPP1__alt1=375 | |UPP1__alt1=375 | ||
| − | | | + | |Uridine_phosphorylase__alt1=375 |
|UCK2=375 | |UCK2=375 | ||
|Uridine_monophosphate_synthetase=375 | |Uridine_monophosphate_synthetase=375 | ||
| Line 352: | Line 352: | ||
|HMDB01056__alt1=375 | |HMDB01056__alt1=375 | ||
|HMDB01056__alt2=375 | |HMDB01056__alt2=375 | ||
| − | | | + | |Apoptosis=375 |
| − | | | + | |DNA_repair=375 |
|P53=375 | |P53=375 | ||
|ERCC2=375 | |ERCC2=375 | ||
| Line 378: | Line 378: | ||
|Cytidine_deaminase=350 | |Cytidine_deaminase=350 | ||
|UPP1=350 | |UPP1=350 | ||
| − | | | + | |Uridine_phosphorylase=350 |
|ECGF1=350 | |ECGF1=350 | ||
|150856=350 | |150856=350 | ||
| Line 384: | Line 384: | ||
|DPYS=350 | |DPYS=350 | ||
|UPB1=350 | |UPB1=350 | ||
| − | | | + | |Uridine_kinase=350 |
|UPP1__alt1=350 | |UPP1__alt1=350 | ||
| − | | | + | |Uridine_phosphorylase__alt1=350 |
|UCK2=350 | |UCK2=350 | ||
|Uridine_monophosphate_synthetase=350 | |Uridine_monophosphate_synthetase=350 | ||
| Line 405: | Line 405: | ||
|HMDB01056__alt1=350 | |HMDB01056__alt1=350 | ||
|HMDB01056__alt2=350 | |HMDB01056__alt2=350 | ||
| − | | | + | |Apoptosis=350 |
| − | | | + | |DNA_repair=350 |
|P53=350 | |P53=350 | ||
|ERCC2=350 | |ERCC2=350 | ||
| Line 431: | Line 431: | ||
|Cytidine_deaminase=25 | |Cytidine_deaminase=25 | ||
|UPP1=25 | |UPP1=25 | ||
| − | | | + | |Uridine_phosphorylase=25 |
|ECGF1=25 | |ECGF1=25 | ||
|150856=207 | |150856=207 | ||
| Line 437: | Line 437: | ||
|DPYS=157 | |DPYS=157 | ||
|UPB1=156 | |UPB1=156 | ||
| − | | | + | |Uridine_kinase=255 |
|UPP1__alt1=165 | |UPP1__alt1=165 | ||
| − | | | + | |Uridine_phosphorylase__alt1=185 |
|UCK2=275 | |UCK2=275 | ||
|Uridine_monophosphate_synthetase=148 | |Uridine_monophosphate_synthetase=148 | ||
| Line 458: | Line 458: | ||
|HMDB01056__alt1=697 | |HMDB01056__alt1=697 | ||
|HMDB01056__alt2=697 | |HMDB01056__alt2=697 | ||
| − | | | + | |Apoptosis=671 |
| − | | | + | |DNA_repair=697 |
|P53=697 | |P53=697 | ||
|ERCC2=697 | |ERCC2=697 | ||
| Line 484: | Line 484: | ||
|Cytidine_deaminase=242.5 | |Cytidine_deaminase=242.5 | ||
|UPP1=189.5 | |UPP1=189.5 | ||
| − | | | + | |Uridine_phosphorylase=189.5 |
|ECGF1=189.5 | |ECGF1=189.5 | ||
|150856=87 | |150856=87 | ||
| Line 490: | Line 490: | ||
|DPYS=284.5 | |DPYS=284.5 | ||
|UPB1=334 | |UPB1=334 | ||
| − | | | + | |Uridine_kinase=165.5 |
|UPP1__alt1=156.5 | |UPP1__alt1=156.5 | ||
| − | | | + | |Uridine_phosphorylase__alt1=156.5 |
|UCK2=165.5 | |UCK2=165.5 | ||
|Uridine_monophosphate_synthetase=32.5 | |Uridine_monophosphate_synthetase=32.5 | ||
| Line 511: | Line 511: | ||
|HMDB01056__alt1=132.5 | |HMDB01056__alt1=132.5 | ||
|HMDB01056__alt2=152.5 | |HMDB01056__alt2=152.5 | ||
| − | | | + | |Apoptosis=299.5 |
| − | | | + | |DNA_repair=251.5 |
|P53=332 | |P53=332 | ||
|ERCC2=231 | |ERCC2=231 | ||
Revision as of 20:52, 7 March 2013
This template is the product of a custom export process of WikiPathways content as interactive pathway maps for Wikipedia articles. Please do not edit these templates directly as they include calculated hyperlinks and annotations based on original content curated at WikiPathways. Please feel free to edit and update the pathway content at WikiPathways. Your changes will be reflected here when the template is regenerated.
The collaborative design of this template, which is actually a set of nested templates with an image map at the core, was initially proposed and refined in collaboration with Gene Wiki and MCB. Please review the background of this discussion before making edits. Feel free to make suggestions in the associated talk pages.
The process of generating the content using this template involves a combination of scripts and manual steps detailed at https://github.com/wikipathways/Wikipedia-template. Feel free to contact WikiPathways if you need assistance updating or creating content using this template.
Features
- Gene links – click on blue-underlined gene boxes in pathway to go to the corresponding Gene Wiki article
- Metabolite links – click on blue-underlined metabolite boxes in pathway to go to the corresponding metabolite article
- Start new pages – click on red-underlined boxes to start a new Wikipedia article where one currently does not exist
- Bold self links – the gene or metabolite focused on in the current article is displayed as a bold-bordered self link
- Pathway links – click anywhere in the background on the pathway to go to the corresponding pathway article with an expanded view of the interactive pathway map
- Variable-controlled cropped view – pathway maps can be cropped by referencing a gene or metabolite (see Usages #2 and #3 below).
- Variable-controlled scroll view – pathway maps can be viewed in a scrollable window at a particular width and height (see Usage #4 below).
Usage
This template is commonly transcluded into the following types of articles in the following ways:
- Pathway articles
- Where you want to see the full pathway
{{TCACycle WP78}}- Gene Wiki articles
- Where you want to crop the pathway view to center on a particular gene
{{TCACycle WP78|highlight=Dihydrolipoyl_transacetylase}}- Metabolite articles
- Where you want to crop the pathway view to center on a particular metabolite
{{TCACycle WP78|highlight=Fumaric_acid}}- Miscellaneous
- Where you override default views and specify the width and height of a scrollable window in which to view the entire pathway
{{TCACycle WP78|width=600|height=300}}width: the width of the scrollable windowheight: the height of the scrollable window
- PLEASE DO NOT
- Please do not transclude below the References section or into other templates commonly transcluded below the Reference section. This produces a red warning (missing refs tag) due to the use of in-line references. Thank you!
Examples
- Citric acid cycle pathway (
{{TCACycle WP78}}) - DLAT gene wiki article (
{{GlycolysisGluconeogenesis_WP534}}) - Where is this template used?
Known issues
- When there is more than one copy of a gene or metabolite on a pathway, clicking on any copy will lead to the same page (as expected) and to the same highlighted and centered view (which may or may not be the particular copy you clicked on). This is because the highlighting and centering are determined by the variable passed in to the template and not by what exactly you click on. So, when using this template on a gene or metabolite article, take note of which copy (if there is more than one) is being highlighted in the view. The template knows about the other copies and you can choose which is the best representative copy to highlight by passing in the right variable. The first copy is given the name of the article (e.g., Apple_acid); additional copies are named "alt1", "alt2", etc. (e.g., Apple_acid__alt1). Note the two underscore characters between the name and the "alt" designation. In this way you can preview and decide which copy you want to highlight on a given gene or metabolite article.
- We do not have a public way of exporting pathways yet.
| The above documentation is transcluded from Template:Interactive pathway maps/doc. (edit | history) Editors can experiment in this template's sandbox (create | mirror) and testcases (create) pages. Subpages of this template. |
Click on genes, proteins and metabolites below to link to respective articles. [1]
- ↑ The interactive pathway map can be edited at WikiPathways: "FluoropyrimidineActivity_WP1601".