Difference between revisions of "Template:GlycolysisGluconeogenesis WP534"

From blackwiki
Jump to navigation Jump to search
imported>KristinaHanspers
imported>KristinaHanspers
Line 19: Line 19:
 
rect 384.8991596638656 272.6274509803923 444.8991596638656 292.6274509803923 [http://en.wikipedia.org/wiki/G6PC go to article]
 
rect 384.8991596638656 272.6274509803923 444.8991596638656 292.6274509803923 [http://en.wikipedia.org/wiki/G6PC go to article]
 
rect 386.0 195.655462184874 446.0 215.655462184874 [http://en.wikipedia.org/wiki/GLUT5 go to article]
 
rect 386.0 195.655462184874 446.0 215.655462184874 [http://en.wikipedia.org/wiki/GLUT5 go to article]
rect 222.5 385.33333333333326 322.5 405.33333333333326 [http://en.wikipedia.org/wiki/Fructose_6-phosphate Go to HMDB]
+
rect 222.5 385.33333333333326 322.5 405.33333333333326 [http://en.wikipedia.org/wiki/Fructose_6-phosphate go to article]
 
rect 695.6666666666667 1232.0 759.3333333333334 1252.0 [http://en.wikipedia.org/wiki/E3_binding_protein go to article]
 
rect 695.6666666666667 1232.0 759.3333333333334 1252.0 [http://en.wikipedia.org/wiki/E3_binding_protein go to article]
 
rect 386.99999999999994 497.66666666666674 446.99999999999994 517.6666666666667 [http://en.wikipedia.org/wiki/Aldolase_A go to article]
 
rect 386.99999999999994 497.66666666666674 446.99999999999994 517.6666666666667 [http://en.wikipedia.org/wiki/Aldolase_A go to article]
Line 76: Line 76:
 
rect 89.0 1079.6666666666665 149.0 1099.6666666666665 [http://en.wikipedia.org/wiki/Lactate_dehydrogenase go to article]
 
rect 89.0 1079.6666666666665 149.0 1099.6666666666665 [http://en.wikipedia.org/wiki/Lactate_dehydrogenase go to article]
 
rect 197.3666666666667 1124.3666666666677 297.3666666666667 1144.3666666666677 [http://en.wikipedia.org/wiki/Lactic_acid go to article]
 
rect 197.3666666666667 1124.3666666666677 297.3666666666667 1144.3666666666677 [http://en.wikipedia.org/wiki/Lactic_acid go to article]
rect 539.9495798319327 309.94117647058823 732.9495798319327 329.94117647058823 [http://www.wikipathways.org/index.php/Pathway:WP134 Go to WikiPathways]
+
rect 539.9495798319327 309.94117647058823 732.9495798319327 329.94117647058823 [http://en.wikipedia.org/wiki/Pentose_phosphate_pathway go to article]
rect 541.9495798319327 353.94117647058823 704.9495798319327 373.94117647058823 [http://www.wikipathways.org/index.php/Pathway:WP500 Go to WikiPathways]
+
rect 541.9495798319327 353.94117647058823 704.9495798319327 373.94117647058823 [http://www.wikipathways.org/index.php/Pathway:WP500 go to WikiPathways]
rect 870.0 1144.0 965.0 1164.0 [http://www.wikipathways.org/index.php/Pathway:WP78 Go to WikiPathways]
+
rect 870.0 1144.0 965.0 1164.0 [http://en.wikipedia.org/wiki/Citric_acid_cycle go to article]
 
rect 593.0 1071.0 673.0 1091.0 [http://www.ncbi.nlm.nih.gov/gene/51660 go to Entrez]
 
rect 593.0 1071.0 673.0 1091.0 [http://www.ncbi.nlm.nih.gov/gene/51660 go to Entrez]
 
rect 593.0 1091.0 673.0 1111.0 [http://en.wikipedia.org/wiki/BRP44 go to article]
 
rect 593.0 1091.0 673.0 1111.0 [http://en.wikipedia.org/wiki/BRP44 go to article]
Line 154: Line 154:
 
{{Annotation|0|0|[[<div style="display:block; width:60px; height:0px; overflow:hidden; position:relative; left:89.0px; top:1084.66666666667px; background:transparent; border-top:3px blue solid"></div>]]}}
 
{{Annotation|0|0|[[<div style="display:block; width:60px; height:0px; overflow:hidden; position:relative; left:89.0px; top:1084.66666666667px; background:transparent; border-top:3px blue solid"></div>]]}}
 
{{Annotation|0|0|[[<div style="display:block; width:100px; height:0px; overflow:hidden; position:relative; left:197.3666666666667px; top:1129.36666666667px; background:transparent; border-top:3px blue solid"></div>]]}}
 
{{Annotation|0|0|[[<div style="display:block; width:100px; height:0px; overflow:hidden; position:relative; left:197.3666666666667px; top:1129.36666666667px; background:transparent; border-top:3px blue solid"></div>]]}}
{{Annotation|0|0|[[<div style="display:block; width:193px; height:0px; overflow:hidden; position:relative; left:539.9495798319327px; top:314.941176470588px; background:transparent; border-top:3px green solid"></div>]]}}
+
{{Annotation|0|0|[[<div style="display:block; width:193px; height:0px; overflow:hidden; position:relative; left:539.9495798319327px; top:314.941176470588px; background:transparent; border-top:3px blue solid"></div>]]}}
 
{{Annotation|0|0|[[<div style="display:block; width:163px; height:0px; overflow:hidden; position:relative; left:541.9495798319327px; top:358.941176470588px; background:transparent; border-top:3px green solid"></div>]]}}
 
{{Annotation|0|0|[[<div style="display:block; width:163px; height:0px; overflow:hidden; position:relative; left:541.9495798319327px; top:358.941176470588px; background:transparent; border-top:3px green solid"></div>]]}}
{{Annotation|0|0|[[<div style="display:block; width:95px; height:0px; overflow:hidden; position:relative; left:870.0px; top:1149px; background:transparent; border-top:3px green solid"></div>]]}}
+
{{Annotation|0|0|[[<div style="display:block; width:95px; height:0px; overflow:hidden; position:relative; left:870.0px; top:1149px; background:transparent; border-top:3px blue solid"></div>]]}}
 
{{Annotation|0|0|[[<div style="display:block; width:80px; height:0px; overflow:hidden; position:relative; left:593.0px; top:1076px; background:transparent; border-top:3px green solid"></div>]]}}
 
{{Annotation|0|0|[[<div style="display:block; width:80px; height:0px; overflow:hidden; position:relative; left:593.0px; top:1076px; background:transparent; border-top:3px green solid"></div>]]}}
 
{{Annotation|0|0|[[<div style="display:block; width:80px; height:0px; overflow:hidden; position:relative; left:593.0px; top:1096px; background:transparent; border-top:3px blue solid"></div>]]}}
 
{{Annotation|0|0|[[<div style="display:block; width:80px; height:0px; overflow:hidden; position:relative; left:593.0px; top:1096px; background:transparent; border-top:3px blue solid"></div>]]}}
Line 436: Line 436:
 
overflow:hidden; position:relative; left:197.3666666666667px; top:1112.36666666667px;
 
overflow:hidden; position:relative; left:197.3666666666667px; top:1112.36666666667px;
 
background:transparent; border:4px black solid"></div>]]}}
 
background:transparent; border:4px black solid"></div>]]}}
|WP134=
+
|Pentose_phosphate_pathway=
 
{{Annotation|0|0|[[<div style="display:block; width:186px; height:12px;
 
{{Annotation|0|0|[[<div style="display:block; width:186px; height:12px;
 
overflow:hidden; position:relative; left:539.9495798319327px; top:297.941176470588px;
 
overflow:hidden; position:relative; left:539.9495798319327px; top:297.941176470588px;
Line 444: Line 444:
 
overflow:hidden; position:relative; left:541.9495798319327px; top:341.941176470588px;
 
overflow:hidden; position:relative; left:541.9495798319327px; top:341.941176470588px;
 
background:transparent; border:4px black solid"></div>]]}}
 
background:transparent; border:4px black solid"></div>]]}}
|WP78=
+
|Citric_acid_cycle=
 
{{Annotation|0|0|[[<div style="display:block; width:88px; height:12px;
 
{{Annotation|0|0|[[<div style="display:block; width:88px; height:12px;
 
overflow:hidden; position:relative; left:870.0px; top:1132px;
 
overflow:hidden; position:relative; left:870.0px; top:1132px;
Line 530: Line 530:
 
|Lactate_dehydrogenase__alt2=375
 
|Lactate_dehydrogenase__alt2=375
 
|Lactic_acid=375
 
|Lactic_acid=375
|WP134=375
+
|Pentose_phosphate_pathway=375
 
|WP500=375
 
|WP500=375
|WP78=375
+
|Citric_acid_cycle=375
 
|51660=375
 
|51660=375
 
|BRP44=375
 
|BRP44=375
Line 607: Line 607:
 
|Lactate_dehydrogenase__alt2=350
 
|Lactate_dehydrogenase__alt2=350
 
|Lactic_acid=350
 
|Lactic_acid=350
|WP134=350
+
|Pentose_phosphate_pathway=350
 
|WP500=350
 
|WP500=350
|WP78=350
+
|Citric_acid_cycle=350
 
|51660=350
 
|51660=350
 
|BRP44=350
 
|BRP44=350
Line 684: Line 684:
 
|Lactate_dehydrogenase__alt2=939.666666666667
 
|Lactate_dehydrogenase__alt2=939.666666666667
 
|Lactic_acid=984.366666666668
 
|Lactic_acid=984.366666666668
|WP134=169.941176470588
+
|Pentose_phosphate_pathway=169.941176470588
 
|WP500=213.941176470588
 
|WP500=213.941176470588
|WP78=1004
+
|Citric_acid_cycle=1004
 
|51660=931
 
|51660=931
 
|BRP44=951
 
|BRP44=951
Line 761: Line 761:
 
|Lactate_dehydrogenase__alt2=10
 
|Lactate_dehydrogenase__alt2=10
 
|Lactic_acid=69.8666666666667
 
|Lactic_acid=69.8666666666667
|WP134=458.949579831933
+
|Pentose_phosphate_pathway=458.949579831933
 
|WP500=445.949579831933
 
|WP500=445.949579831933
|WP78=650
+
|Citric_acid_cycle=650
 
|51660=455.5
 
|51660=455.5
 
|BRP44=455.5
 
|BRP44=455.5

Revision as of 21:48, 11 March 2013

Template documentation[view] [edit] [history] [purge]

This template is the product of a custom export process of WikiPathways content as interactive pathway maps for Wikipedia articles. Please do not edit these templates directly as they include calculated hyperlinks and annotations based on original content curated at WikiPathways. Please feel free to edit and update the pathway content at WikiPathways. Your changes will be reflected here when the template is regenerated.

The collaborative design of this template, which is actually a set of nested templates with an image map at the core, was initially proposed and refined in collaboration with Gene Wiki and MCB. Please review the background of this discussion before making edits. Feel free to make suggestions in the associated talk pages.

The process of generating the content using this template involves a combination of scripts and manual steps detailed at https://github.com/wikipathways/Wikipedia-template. Feel free to contact WikiPathways if you need assistance updating or creating content using this template.

Features

  • Gene links – click on blue-underlined gene boxes in pathway to go to the corresponding Gene Wiki article
  • Metabolite links – click on blue-underlined metabolite boxes in pathway to go to the corresponding metabolite article
  • Start new pages – click on red-underlined boxes to start a new Wikipedia article where one currently does not exist
  • Bold self links – the gene or metabolite focused on in the current article is displayed as a bold-bordered self link
  • Pathway links – click anywhere in the background on the pathway to go to the corresponding pathway article with an expanded view of the interactive pathway map
  • Variable-controlled cropped view – pathway maps can be cropped by referencing a gene or metabolite (see Usages #2 and #3 below).
  • Variable-controlled scroll view – pathway maps can be viewed in a scrollable window at a particular width and height (see Usage #4 below).

Usage

This template is commonly transcluded into the following types of articles in the following ways:

Pathway articles
Where you want to see the full pathway
{{TCACycle WP78}}
Gene Wiki articles
Where you want to crop the pathway view to center on a particular gene
{{TCACycle WP78|highlight=Dihydrolipoyl_transacetylase}}
Metabolite articles
Where you want to crop the pathway view to center on a particular metabolite
{{TCACycle WP78|highlight=Fumaric_acid}}
Miscellaneous
Where you override default views and specify the width and height of a scrollable window in which to view the entire pathway
{{TCACycle WP78|width=600|height=300}}
  • width: the width of the scrollable window
  • height: the height of the scrollable window
PLEASE DO NOT
Please do not transclude below the References section or into other templates commonly transcluded below the Reference section. This produces a red warning (missing refs tag) due to the use of in-line references. Thank you!

Examples

Known issues

  • When there is more than one copy of a gene or metabolite on a pathway, clicking on any copy will lead to the same page (as expected) and to the same highlighted and centered view (which may or may not be the particular copy you clicked on). This is because the highlighting and centering are determined by the variable passed in to the template and not by what exactly you click on. So, when using this template on a gene or metabolite article, take note of which copy (if there is more than one) is being highlighted in the view. The template knows about the other copies and you can choose which is the best representative copy to highlight by passing in the right variable. The first copy is given the name of the article (e.g., Apple_acid); additional copies are named "alt1", "alt2", etc. (e.g., Apple_acid__alt1). Note the two underscore characters between the name and the "alt" designation. In this way you can preview and decide which copy you want to highlight on a given gene or metabolite article.
  • We do not have a public way of exporting pathways yet.

Click on genes, proteins and metabolites below to link to respective articles. [1]

Template:Preview Crop

  1. The interactive pathway map can be edited at WikiPathways: "GlycolysisGluconeogenesis_WP534".