Difference between revisions of "Template:MECP2andAssociatedRettSyndrome WP3584"

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imported>KristinaHanspers
(updated node links)
imported>KristinaHanspers
(updated node links)
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rect 434.82140157650383 98.83609106894657 514.8214015765038 118.83609106894657 [https://en.wikipedia.org/wiki/CTCF Go to article]
 
rect 434.82140157650383 98.83609106894657 514.8214015765038 118.83609106894657 [https://en.wikipedia.org/wiki/CTCF Go to article]
 
rect 434.82140157650383 61.83609106894656 514.8214015765038 81.83609106894656 [https://en.wikipedia.org/wiki/Sp3_transcription_factor Go to article]
 
rect 434.82140157650383 61.83609106894656 514.8214015765038 81.83609106894656 [https://en.wikipedia.org/wiki/Sp3_transcription_factor Go to article]
rect 880.6591948644361 551.3110443611077 960.6591948644361 571.3110443611077 [http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MIMAT0004561 Go to miRBase]
+
rect 880.6591948644361 551.3110443611077 960.6591948644361 571.3110443611077 [https://en.wikipedia.org/wiki/Mir-187_microRNA_precursor_family Go to article]
 
rect 242.47489471979304 79.10700788251809 322.47489471979304 99.10700788251809 [http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MIMAT0000438 Go to miRBase]
 
rect 242.47489471979304 79.10700788251809 322.47489471979304 99.10700788251809 [http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=MIMAT0000438 Go to miRBase]
 
rect 698.6360428389208 279.18906963518793 778.6360428389208 299.18906963518793 [https://www.ncbi.nlm.nih.gov/gene/84950 Go to Entrez Gene]
 
rect 698.6360428389208 279.18906963518793 778.6360428389208 299.18906963518793 [https://www.ncbi.nlm.nih.gov/gene/84950 Go to Entrez Gene]
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|MIMAT0004561=
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|Mir-187_microRNA_precursor_family=
 
{{Annotation|0|0|[[<div style="display:block; width:73px; height:12px;
 
{{Annotation|0|0|[[<div style="display:block; width:73px; height:12px;
 
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|CTCF=375
 
|CTCF=375
 
|Sp3_transcription_factor=375
 
|Sp3_transcription_factor=375
|MIMAT0004561=375
+
|Mir-187_microRNA_precursor_family=375
 
|MIMAT0000438=375
 
|MIMAT0000438=375
 
|PRPF38A=375
 
|PRPF38A=375
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|CTCF=350
 
|CTCF=350
 
|Sp3_transcription_factor=350
 
|Sp3_transcription_factor=350
|MIMAT0004561=350
+
|Mir-187_microRNA_precursor_family=350
 
|MIMAT0000438=350
 
|MIMAT0000438=350
 
|PRPF38A=350
 
|PRPF38A=350
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|CTCF=25
 
|CTCF=25
 
|Sp3_transcription_factor=25
 
|Sp3_transcription_factor=25
|MIMAT0004561=411.311044361108
+
|Mir-187_microRNA_precursor_family=411.311044361108
 
|MIMAT0000438=25
 
|MIMAT0000438=25
 
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|PRPF38A=139.189069635188
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|CTCF=297.321401576504
 
|CTCF=297.321401576504
 
|Sp3_transcription_factor=297.321401576504
 
|Sp3_transcription_factor=297.321401576504
|MIMAT0004561=743.159194864436
+
|Mir-187_microRNA_precursor_family=743.159194864436
 
|MIMAT0000438=104.974894719793
 
|MIMAT0000438=104.974894719793
 
|PRPF38A=561.136042838921
 
|PRPF38A=561.136042838921

Revision as of 22:33, 17 January 2017

Template documentation[view] [edit] [history] [purge]

This template is the product of a custom export process of WikiPathways content as interactive pathway maps for Wikipedia articles. Please do not edit these templates directly as they include calculated hyperlinks and annotations based on original content curated at WikiPathways. Please feel free to edit and update the pathway content at WikiPathways. Your changes will be reflected here when the template is regenerated.

The collaborative design of this template, which is actually a set of nested templates with an image map at the core, was initially proposed and refined in collaboration with Gene Wiki and MCB. Please review the background of this discussion before making edits. Feel free to make suggestions in the associated talk pages.

The process of generating the content using this template involves a combination of scripts and manual steps detailed at https://github.com/wikipathways/Wikipedia-template. Feel free to contact WikiPathways if you need assistance updating or creating content using this template.

Features

  • Gene links – click on blue-underlined gene boxes in pathway to go to the corresponding Gene Wiki article
  • Metabolite links – click on blue-underlined metabolite boxes in pathway to go to the corresponding metabolite article
  • Start new pages – click on red-underlined boxes to start a new Wikipedia article where one currently does not exist
  • Bold self links – the gene or metabolite focused on in the current article is displayed as a bold-bordered self link
  • Pathway links – click anywhere in the background on the pathway to go to the corresponding pathway article with an expanded view of the interactive pathway map
  • Variable-controlled cropped view – pathway maps can be cropped by referencing a gene or metabolite (see Usages #2 and #3 below).
  • Variable-controlled scroll view – pathway maps can be viewed in a scrollable window at a particular width and height (see Usage #4 below).

Usage

This template is commonly transcluded into the following types of articles in the following ways:

Pathway articles
Where you want to see the full pathway
{{TCACycle WP78}}
Gene Wiki articles
Where you want to crop the pathway view to center on a particular gene
{{TCACycle WP78|highlight=Dihydrolipoyl_transacetylase}}
Metabolite articles
Where you want to crop the pathway view to center on a particular metabolite
{{TCACycle WP78|highlight=Fumaric_acid}}
Miscellaneous
Where you override default views and specify the width and height of a scrollable window in which to view the entire pathway
{{TCACycle WP78|width=600|height=300}}
  • width: the width of the scrollable window
  • height: the height of the scrollable window
PLEASE DO NOT
Please do not transclude below the References section or into other templates commonly transcluded below the Reference section. This produces a red warning (missing refs tag) due to the use of in-line references. Thank you!

Examples

Known issues

  • When there is more than one copy of a gene or metabolite on a pathway, clicking on any copy will lead to the same page (as expected) and to the same highlighted and centered view (which may or may not be the particular copy you clicked on). This is because the highlighting and centering are determined by the variable passed in to the template and not by what exactly you click on. So, when using this template on a gene or metabolite article, take note of which copy (if there is more than one) is being highlighted in the view. The template knows about the other copies and you can choose which is the best representative copy to highlight by passing in the right variable. The first copy is given the name of the article (e.g., Apple_acid); additional copies are named "alt1", "alt2", etc. (e.g., Apple_acid__alt1). Note the two underscore characters between the name and the "alt" designation. In this way you can preview and decide which copy you want to highlight on a given gene or metabolite article.
  • We do not have a public way of exporting pathways yet.

Click on genes, proteins and metabolites below to link to respective articles. [§ 1]

[[File:
MECP2_and_Associated_Rett_Syndrome_WP3584Go to articleGo to articleGo to miRBaseGo to articleGo to articleGo to articleGo to articleGo to miRBaseGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to miRBaseGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to Entrez GeneGo to WikiPathwaysGo to articleGo to articleGo to articleGo to articleGo to articleGo to miRBaseGo to articleGo to articleGo to miRBaseGo to articleGo to articleGo to articleGo to miRBaseGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to miRBaseGo to miRBaseGo to articleGo to articleGo to articleGo to miRBaseGo to Entrez GeneGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to miRBaseGo to articleGo to miRBaseGo to articleGo to miRBaseGo to articleGo to articleGo to miRBaseGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to miRBaseGo to Entrez GeneGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to Entrez GeneGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to article
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MECP2_and_Associated_Rett_Syndrome_WP3584Go to articleGo to articleGo to miRBaseGo to articleGo to articleGo to articleGo to articleGo to miRBaseGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to miRBaseGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to Entrez GeneGo to WikiPathwaysGo to articleGo to articleGo to articleGo to articleGo to articleGo to miRBaseGo to articleGo to articleGo to miRBaseGo to articleGo to articleGo to articleGo to miRBaseGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to miRBaseGo to miRBaseGo to articleGo to articleGo to articleGo to miRBaseGo to Entrez GeneGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to miRBaseGo to articleGo to miRBaseGo to articleGo to miRBaseGo to articleGo to articleGo to miRBaseGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to miRBaseGo to Entrez GeneGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to Entrez GeneGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to articleGo to article
|{{{bSize}}}px|alt=MECP2 and associated Rett Syndrome edit]]
MECP2 and associated Rett Syndrome edit
  1. The interactive pathway map can be edited at WikiPathways: "WP3584".