Template:Clade/demo

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Template:Clade
Node structure
label1

leaf 1

 
label2
label A

leaf A

 
label B

leaf B

 
 leaf 2 is a nested clade structure
 
label3

leaf 3

sublabel3
|label1=Node structure  |sublabel1=(brackets)
|style1=background-color:#ffdddd;
|1={{Clade
   |label1=label1  
   |1=leaf 1             
   |label2=label2
   |grouplabel2= leaf 3 is a nested clade structure 
   |2={{Clade |style=background-color:#ffaaaa;
      |label1=label A
      |1=leaf A
      |label2=label B
      |2=leaf B
      |bar1=purple |bar2=purple 
      }}
   |label3=label3 |sublabel3=sublabel3
   |3=leaf 3           
   }}
(brackets)
 

 

 
Leaf styling
thicknessN
 

1 (default)

 
 

2

 line thickness
 
 

3

 
 
colorN
 

black (default)

 
 

red

 
 

blue

 
 

 #00ff00

 
 
stateN
 

solid (default)

 
 

dotted

 
 

dashed

 line styles
 
 

none

 
 

double

 
 
|label3=Leaf styling  |sublabel3=(branches)
|style3=background-color:#eeeeee;
|3={{Clade
   |label1=thicknessN
   |1={{Clade
      |1=1 (default) |thickness1=1 |barbegin1=blue 
      |2=2           |thickness2=2 |bar2=blue |barlabel2= line thickness
      |3=3           |thickness3=3 |barend3=blue 
      }}
   |label2=colorN
   |2={{Clade
      |1=black (default) |color1=black          
      |2=red             |color2=red    
      |3=blue            |color3=blue   
      |4= #00ff00   |color4=#00ff00   
      }}
   |label3=stateN
   |3={{Clade
      |1=solid (default) |state1=solid  |barbegin1=purple 
      |2=dotted          |state2=dotted |bar2=purple 
      |3=dashed          |state3=dashed |bar3=purple |barlabel3= line styles
      |4=none            |state4=none   |bar4=purple
      |5=double          |state5=double |barend5=purple 
      }}
   }}
(branches)
node styling
thickness
 

I

 
 

J

 
 

K

 
 
color
 

A

 
 

B

 
 

C

 
 
state
 

X

 
 

Y

 
 

Z

 
 
|label4=node styling  |sublabel4=(brackets)
|style4=background-color:#ffffee;
|4={{Clade
   |label1=thickness
   |1={{Clade |thickness=3
      |1=I  
      |2=J          
      |3=K             
      }}
   |label2=color
   |2={{Clade |color=red 
      |1=A
      |2=B                
      |3=C             
      }}
   |label3=state
   |3={{Clade |state=dashed
      |1=X 
      |2=Y         
      |3=Z        
   }} }}
(brackets)
 

 

 
newick
string

((lion,jaguar,leopard),((siberian,bengal)tiger,snow leopard))panthera

 
subtree
panthera
 
 

lion

 
 

jaguar

 
 

leopard

 
 
 
tiger
 

siberian

 
 

bengal

 
 
 

snow leopard

 
 
 
 expanded Newick string
 
|label6=newick  
|style6=background-color:#ddffdd;
|6={{Clade
   |label1=string
   |1=((lion,jaguar,leopard),((siberian,bengal)tiger,snow leopard))panthera         
   |label2=subtree 
   |grouplabel2= expanded Newick string    
   |grouplabelstyle2=vertical-align: middle;
   |2={{Clade |style=background-color:#ccffcc;
      |newick1=((lion,jaguar,leopard),((siberian,bengal)tiger,snow leopard))panthera
      |1=Leaf1 (redundant if newick1 set)        
      }}
   }}
 
paraphyly example 
 
 

Geraniales

 
 

Myrtales

 
 
clade
 

Crossosomatales

 
 
 

Picramniales

 
 
 

Sapindales

 
 
 

Huerteales

 
 
 

Brassicales

 
 

Malvales

 
 
 
 
 
 label a paraphyletic group within a clade
 
|label7=paraphyly example  |style7=background-color:#ffeeff;
|7={{Clade
   |1={{Clade
      |1=[[Geraniales]]          
      |2=[[Myrtales]]            
      }}
   |grouplabel2= label a paraphyletic group within a clade   
   |label2=clade
   |style2=background-color:#ffddff;
   |2={{Clade
      |1=[[Crossosomatales]]         |barbegin1=purple
      |2={{Clade
         |1=[[Picramniales]]         |bar1=purple
         |2={{Clade
            |1=[[Sapindales]]        |bar1=purple 
            |2={{Clade
               |1=[[Huerteales]]     |bar1=purple
               |2={{Clade
                  |1=[[Brassicales]] |barend1=purple
                  |2=[[Malvales]]    |style2=background-color:#ff99ff;
   }} }} }} }} }} }}
 

A cladogram illustrating clade features.